2018 NYU GOC Meeting Agenda: Difference between revisions
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* Presentation of update website/Report on Documentation jamboree | * Presentation of update website/Report on Documentation jamboree | ||
* Outreach plans (Suzi A) | * Outreach plans (Suzi A) | ||
== Annotation == | == Annotation == | ||
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* GP annotations to terms that refer to 'drugs' | * GP annotations to terms that refer to 'drugs' | ||
**https://github.com/geneontology/go-ontology/issues/15379 | **https://github.com/geneontology/go-ontology/issues/15379 | ||
== Infrastructure == | |||
* Release pipeline/new release cycle [https://github.com/orgs/geneontology/projects/11] (Seth, Eric) | |||
** Documentation https://github.com/geneontology/go-site/issues/555 | |||
** UPDATE: Injection of PAINT annotations at GO Central (Huaiyu) | |||
** Discussion: Injection of GPADs derived from production GO-CAMs (Chris) | |||
** Automated QC (Eric, Kimberley) | |||
* public API (Nathan, Deepak) | |||
** Example of use: Ribbon (Nathan) | |||
== GO-CAMs == | == GO-CAMs == | ||
Revision as of 11:10, 21 March 2018
Suggestions for topics
Documentation and Outreach
- Presentation of update website/Report on Documentation jamboree
- Outreach plans (Suzi A)
Annotation
- Report: Annotation group (https://github.com/geneontology/go-annotation/milestone/2)
- Status Signaling workshop tasks
- Report: QC group: annotation review stats
- Cancer signaling pathways review (note: I also have this under GP2Term relations below; chris)
- HTP annotations : present annotation guidelines
- Complex working group report
- GP2Term Relations [1] (Suzi L, Kimberley)
- See Category:Gene_Product_to_Term_Relations
- Case study: Xena and cancer signaling project (Suzi L)
- UPDATE: GP2Term Relations coming from Noctua (Chris)
- UPDATE/discussion: Enabling usage by users and bioinformaticians (Deepak, Laurent-Phillippe)
- UPDATE: Display in AmiGO (Suzi L, Seth)
- GP annotations to terms that refer to 'drugs'
Infrastructure
- Release pipeline/new release cycle [2] (Seth, Eric)
- Documentation https://github.com/geneontology/go-site/issues/555
- UPDATE: Injection of PAINT annotations at GO Central (Huaiyu)
- Discussion: Injection of GPADs derived from production GO-CAMs (Chris)
- Automated QC (Eric, Kimberley)
- public API (Nathan, Deepak)
- Example of use: Ribbon (Nathan)
GO-CAMs
- Noctua status reports
- 1.0 Release [3] Seth, Chris
- Tour of the SAE: Tremayne, Paul
- Importing Reactome into Noctua: Ben, David
- Seeding models from GAFs: Dustin, Eric
- Roll-out plan/discussion: Kimberley
- Community usage of GO-CAMs
- GO-CAM landing page [4] (Laurent-Phillippe)
- Export to other formats and import into other databases (Laurent-Phillippe)
Enrichment in the cloud
- Update (USC/LBL)
Ontology Group
- Report on ontology development group
- action item review: https://github.com/geneontology/go-ontology/milestone/5
- Update MF refactor (WHO? LINK?)
- Update: Tx refactor (WHO? LINK?)
- Report from ontology group on alignment of Rhea, Reactome, IntAct and GO with their recommendations for moving forward. GH ticket is here [5] (Jim, Ben?)
- Evolutionary taxon relations (Paul, Chris)
Suggestions for topics Fall 2018
- 'Response to' workshop (similar to the signaling WS)