Difference between revisions of "2018 NYU GOC Meeting Agenda"

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(Annotation)
(Suggestions for topics)
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* Presentation of update website/Report on Documentation jamboree
 
* Presentation of update website/Report on Documentation jamboree
 
* Outreach plans (Suzi A)
 
* Outreach plans (Suzi A)
 
== Infrastructure ==
 
 
* Release pipeline/new release cycle [https://github.com/orgs/geneontology/projects/11] (Seth, Eric)
 
** Documentation https://github.com/geneontology/go-site/issues/555
 
** UPDATE: Injection of PAINT annotations at GO Central (Huaiyu)
 
** Discussion: Injection of GPADs derived from production GO-CAMs (Chris)
 
** Automated QC (Eric, Kimberley)
 
* public API (Nathan, Deepak)
 
** Example of use: Ribbon (Nathan)
 
  
 
== Annotation ==
 
== Annotation ==
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* GP annotations to terms that refer to 'drugs'
 
* GP annotations to terms that refer to 'drugs'
 
**https://github.com/geneontology/go-ontology/issues/15379
 
**https://github.com/geneontology/go-ontology/issues/15379
 +
 +
 +
== Infrastructure ==
 +
 +
* Release pipeline/new release cycle [https://github.com/orgs/geneontology/projects/11] (Seth, Eric)
 +
** Documentation https://github.com/geneontology/go-site/issues/555
 +
** UPDATE: Injection of PAINT annotations at GO Central (Huaiyu)
 +
** Discussion: Injection of GPADs derived from production GO-CAMs (Chris)
 +
** Automated QC (Eric, Kimberley)
 +
* public API (Nathan, Deepak)
 +
** Example of use: Ribbon (Nathan)
 +
  
 
== GO-CAMs ==  
 
== GO-CAMs ==  

Revision as of 07:10, 21 March 2018

Suggestions for topics

Documentation and Outreach

  • Presentation of update website/Report on Documentation jamboree
  • Outreach plans (Suzi A)

Annotation

  • Report: Annotation group (https://github.com/geneontology/go-annotation/milestone/2)
    • Status Signaling workshop tasks
  • Report: QC group: annotation review stats
    • Cancer signaling pathways review (note: I also have this under GP2Term relations below; chris)
  • HTP annotations : present annotation guidelines
  • Complex working group report


Infrastructure

  • Release pipeline/new release cycle [2] (Seth, Eric)
  • public API (Nathan, Deepak)
    • Example of use: Ribbon (Nathan)


GO-CAMs

  • Noctua status reports
    • 1.0 Release [3] Seth, Chris
    • Tour of the SAE: Tremayne, Paul
    • Importing Reactome into Noctua: Ben, David
    • Seeding models from GAFs: Dustin, Eric
    • Roll-out plan/discussion: Kimberley
  • Community usage of GO-CAMs
    • GO-CAM landing page [4] (Laurent-Phillippe)
    • Export to other formats and import into other databases (Laurent-Phillippe)


Enrichment in the cloud

  • Update (USC/LBL)

Ontology Group

  • Report from ontology group on alignment of Rhea, Reactome, IntAct and GO with their recommendations for moving forward. GH ticket is here [5] (Jim, Ben?)
  • Evolutionary taxon relations (Paul, Chris)

Suggestions for topics Fall 2018

  • 'Response to' workshop (similar to the signaling WS)