2018 NYU SAB Meeting Agenda
From GO Wiki
Revision as of 11:00, 14 April 2018 by Paul Thomas
May 15, 2018
- 1 Agenda
- 2 TO DO
- 3 What we'd like to show
- 4 Important points from the 2015 SAB report
- 5 Questions we'd like to ask
- 6 Somewhat random items from managers call that we might want to raise with the SAB
- Breakfast will be served at 8:30 AM
Morning Session (Open to GOC members)
- The morning session includes progress reports on the aims of the grant, objectives of the GOC, and immediate next steps.
- 9:00 am - 9:15 am -- Usage, user community, metrics and impact (Judy Blake)
- 9:15 am - 9:40 am -- Consortium grant aims, project organization and progress highlights (Paul Thomas)
- 9:40 am - 9:55 am -- Working group updates: outreach and QA (Pascale Gaudet)
- 9:55 am - 10:10 am -- Working group updates: Annotation and GO-CAM (Kimberly van Auken)
- 10:10 am - 10:25 am -- Working group updates: Ontology development (David Hill)
- 10:25 am - 10:40 am -- Working group updates: PAINT (Huaiyu Mi)
- 10:40 am - 11:00 am -- Coffee Break
- 11:00 am - 11:10 am -- GOC and the Alliance of Genome Resources (Paul Sternberg)
- 11:00 am - 11:20 am -- GOC and the NIH Data Commons Pilot Consortium (Mike Cherry)
- 11:20 am - 11:45 am -- Goals for the next year (Suzi Lewis and Chris Mungall)
Afternoon Session (Closed Discussion)
- 11:45 am - 1:00 pm Lunch -- Private lunch and discussion for SAB and PIs.
- 1:00 pm - 2:30 pm -- SAB private discussion
- 2:30 pm - 3:30 pm -- SAB and PI group; Feedback and discussion
- 3:30 pm - End of 2015 GOC SAB meeting
- What materials do we need to prepare in advance ?
- Update on priorities/progress
- Metrics of our accomplishments
- Are there any specific questions we have for the SAB?
- Mention relationship with AGR, etc
What we'd like to show
Demo, show groups using it
- particularly usage of enrichment analysis and compare to DAVID stats - see 2017 progress report for ideas
- GO should provide more information about literature coverage in curation, so that users are better-informed about potential gaps and progress in annotation.
- Implementation and first achievements
Important points from the 2015 SAB report
Organization of the GOC
- GOC projects and resources
- QA group
- update functionality, pipeline
- show impact using one of Suzi's TCGA cancer pathways
- Ask David H to report MGI's experience with Noctua
Capella: paper viewer tool
Broader community initiatives
- Developer community: R packages for GO (technical outreach)
- Draft some best practices for the developer community (See also paper - reproduciblity with GO PMID:29572502)
- Best practices document for using GO, including GO enrichment (Paul)
- Suggestion to have a “Certified GO tool developer” program with badges (not implement but what do people think ? can we also do that for curators?
- Can GO partner with other enrichment tools beyond panther?
- Make GO data available via web services to help people keep their data up to date (ongoing)
- What is the future of https://github.com/cmungall/term-enrichment-protocol for standardizing among various enrichment tools? (not updated since 2014)
- Create an index of external tools that have been evaluated by key standard metrics and this could translate into a gold star rating system on the GO website -> No resources to do that
- How do the priorities of the Alliance GO working group align with the priorities of the GOC overall?
- What are the most important things for GO to do in the next six months?
- GO work that is driven by priorities of alliance (Chris):
- Get the GO API up and running (done by Nathan)
- Noctua being rolled out to Alliance members (Noctua is a shared Alliance tool)
- Visualization of Noctua models
- GO ribbon
- GO is not just 'tags on genes' anymore, but also pathways, so we need to coordinate this
Questions we'd like to ask
- Should we push out GO-CAMs into pathway databases like pathwaycommons, ndex, ...?
- Are there other communities that the SAB recommends/suggests we connect with ?
Somewhat random items from managers call that we might want to raise with the SAB
- Reactome import into Noctua