25 FEB 2014 PAINT Phone Conference call: Difference between revisions
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Discussion topics: | Discussion topics: | ||
===New version of PAINT (beta73)=== | ===New version of PAINT (beta73)=== | ||
Fixes the problem with the NOT (except for the bug reported by Pascale, see below). | * Fixes the problem with the NOT (except for the bug reported by Pascale, see below). | ||
It also fixes the problem with the labeling of the matrix - Suzi had made it such that parents of an annotated term were labeled like that annotated term, which made it very confusing to find what term a column actually corresponded to. | * It also fixes the problem with the labeling of the matrix - Suzi had made it such that parents of an annotated term were labeled like that annotated term, which made it very confusing to find what term a column actually corresponded to. | ||
===DNA repair/DNA replication project=== | ===DNA repair/DNA replication project=== | ||
See http://goo.gl/BaQxMC | * See http://goo.gl/BaQxMC | ||
Families were obtained as follows: (1) Searched for DNA repair in AmiGO2. (2) Took all 'is_a' children terms, and look for the Panther families containing proteins with experimental annotations | * Families were obtained as follows: (1) Searched for DNA repair in AmiGO2. (2) Took all 'is_a' children terms, and look for the Panther families containing proteins with experimental annotations | ||
* Karen pointed out that there are many families missing, at least for the DNA replication annotations. | |||
* Discussion: (Pascale): The reason for selecting those is that otherwise we cannot do the most important annotations in PAINT if the primary annotations are not there. What should we do ? | |||
** We agreed to add missing families to the list, with a note that they cannot be annotated yet. | |||
Revision as of 14:19, 25 February 2014
Present: Pascale, Moni, Karen, Li
Discussion topics:
New version of PAINT (beta73)
- Fixes the problem with the NOT (except for the bug reported by Pascale, see below).
- It also fixes the problem with the labeling of the matrix - Suzi had made it such that parents of an annotated term were labeled like that annotated term, which made it very confusing to find what term a column actually corresponded to.
DNA repair/DNA replication project
- See http://goo.gl/BaQxMC
- Families were obtained as follows: (1) Searched for DNA repair in AmiGO2. (2) Took all 'is_a' children terms, and look for the Panther families containing proteins with experimental annotations
- Karen pointed out that there are many families missing, at least for the DNA replication annotations.
- Discussion: (Pascale): The reason for selecting those is that otherwise we cannot do the most important annotations in PAINT if the primary annotations are not there. What should we do ?
- We agreed to add missing families to the list, with a note that they cannot be annotated yet.