25 FEB 2014 PAINT Phone Conference call: Difference between revisions

Revision as of 14:21, 25 February 2014

Present: Pascale, Moni, Karen, Li

Discussion topics:

Fixes the problem with the NOT (except for the bug reported by Pascale, see below).
It also fixes the problem with the labeling of the matrix - Suzi had made it such that parents of an annotated term were labeled like that annotated term, which made it very confusing to find what term a column actually corresponded to.

See http://goo.gl/BaQxMC
Families were obtained as follows: (1) Searched for DNA repair in AmiGO2. (2) Took all 'is_a' children terms, and look for the Panther families containing proteins with experimental annotations
Karen pointed out that there are many families missing, at least for the DNA replication annotations.
Discussion: (Pascale): The reason for selecting those is that otherwise we cannot do the most important annotations in PAINT if the primary annotations are not there. What should we do ?
- We agreed to add missing families to the list, with a note that they cannot be annotated yet. It'd be nice to also communicate the information to the relevant MOD so that the major function of those proteins would be annotated.

@@ Line 12: / Line 12: @@
 * Karen pointed out that there are many families missing, at least for the DNA replication annotations.
 * Discussion: (Pascale): The reason for selecting those is that otherwise we cannot do the most important annotations in PAINT if the primary annotations are not there. What should we do ?
-** We agreed to add missing families to the list, with a note that they cannot be annotated yet.
+** '''We agreed to add missing families to the list''', with a note that they cannot be annotated yet. It'd be nice to also communicate the information to the relevant MOD so that the major function of those proteins would be annotated.