2 June 2020 PAINT Conference Call: Difference between revisions
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Revision as of 06:32, 2 June 2020
Present
Discussion points
June GO release: with PANTHER 15
- 7 new species/1 species removed
- some annotations gone (like 2000 rat - probably this level of change is expected ? )
- See stats here: https://docs.google.com/spreadsheets/d/1Y3kjnupkUNB5dsJ3FxnAe4VXmO3u_10c4d_OCxwsNhw/edit#gid=1781999706
Following up on previous actions
Update on Obsolete filtering obsolete Uniprot entries at each PAINT release
https://github.com/pantherdb/fullgo_paint_update/issues/46
Update on Taxon constraints
The test version is available at http://panthertest3.med.usc.edu:8083/
We plan to release it before the GO meeting.
Questions discussed last time:
- What to do when TC is violated in the experimental annotation? Example:http://amigo.geneontology.org/amigo/gene_product/FB:FBgn0003507
- What to do when incorrect qualifier is used? Example: http://amigo.geneontology.org/amigo/gene_product/MGI:MGI:2137670
- Taxon constraint file may not be perfect.