2 June 2020 PAINT Conference Call: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
(Created page with "=Present= =Discussion points= ==June GO release: with PANTHER 15== * 7 new species/1 species removed * some annotations gone (like 2000 rat - probably this level of chang...")
 
mNo edit summary
Line 9: Line 9:
* some annotations gone (like 2000 rat - probably this level of change is expected ? )  
* some annotations gone (like 2000 rat - probably this level of change is expected ? )  
* See stats here: https://docs.google.com/spreadsheets/d/1Y3kjnupkUNB5dsJ3FxnAe4VXmO3u_10c4d_OCxwsNhw/edit#gid=1781999706
* See stats here: https://docs.google.com/spreadsheets/d/1Y3kjnupkUNB5dsJ3FxnAe4VXmO3u_10c4d_OCxwsNhw/edit#gid=1781999706
==New species for Panther 16?==
See Val's email
Those 3 are high priority:
* Magnaporthe oryzae  - apart from the intensity of molecular studies, it causes rice blast and rice is the world's most important cereal crop.
* Fusarium graminarum (aka Giberella zeae) - head blight of wheat and barley; very active research community.
* Candida glabrata - yeast pathogen of humans. Unlike C. albicans, it is pathogenic in the yeast, rather than the filamentous form.




Revision as of 08:51, 2 June 2020

Present

Discussion points

June GO release: with PANTHER 15

New species for Panther 16?

See Val's email Those 3 are high priority:

  • Magnaporthe oryzae - apart from the intensity of molecular studies, it causes rice blast and rice is the world's most important cereal crop.
  • Fusarium graminarum (aka Giberella zeae) - head blight of wheat and barley; very active research community.
  • Candida glabrata - yeast pathogen of humans. Unlike C. albicans, it is pathogenic in the yeast, rather than the filamentous form.


Following up on previous actions

Update on Obsolete filtering obsolete Uniprot entries at each PAINT release

https://github.com/pantherdb/fullgo_paint_update/issues/46


Update on Taxon constraints

The test version is available at http://panthertest3.med.usc.edu:8083/

We plan to release it before the GO meeting.

Questions discussed last time:

  1. What to do when TC is violated in the experimental annotation? Example:http://amigo.geneontology.org/amigo/gene_product/FB:FBgn0003507
  2. What to do when incorrect qualifier is used? Example: http://amigo.geneontology.org/amigo/gene_product/MGI:MGI:2137670
  3. Taxon constraint file may not be perfect.
Retrieved from "https://wiki.geneontology.org/index.php?title=2_June_2020_PAINT_Conference_Call&oldid=78265"