2 June 2020 PAINT Conference Call: Difference between revisions
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* Magnaporthe oryzae - apart from the intensity of molecular studies, it causes rice blast and rice is the world's most important cereal crop. | * Magnaporthe oryzae - apart from the intensity of molecular studies, it causes rice blast and rice is the world's most important cereal crop. | ||
* Fusarium graminarum (aka Giberella zeae) - head blight of wheat and barley; very active research community. | * Fusarium graminarum (aka Giberella zeae) - head blight of wheat and barley; very active research community. | ||
* Candida glabrata - yeast pathogen of humans. Unlike C. albicans, it is pathogenic in the yeast, rather than the filamentous form. | * Candida glabrata - yeast pathogen of humans. Unlike C. albicans, it is pathogenic in the yeast, rather than the filamentous form. | ||
** Paul will reply to Val. | |||
=Following up on previous actions= | =Following up on previous actions= | ||
Revision as of 12:40, 2 June 2020
Present
Discussion points
June GO release: with PANTHER 15
- 7 new species/1 species removed
- some annotations gone (like 2000 rat - probably this level of change is expected ? )
- See stats here: https://docs.google.com/spreadsheets/d/1Y3kjnupkUNB5dsJ3FxnAe4VXmO3u_10c4d_OCxwsNhw/edit#gid=1781999706
- Species removed: Sulfolobus solfataricus taxon id: 273057 - probably a bug. Dustin will fix this.
But we will let the release go ahead regardless.
New species for Panther 16?
See Val's email Those 3 are high priority:
- Magnaporthe oryzae - apart from the intensity of molecular studies, it causes rice blast and rice is the world's most important cereal crop.
- Fusarium graminarum (aka Giberella zeae) - head blight of wheat and barley; very active research community.
- Candida glabrata - yeast pathogen of humans. Unlike C. albicans, it is pathogenic in the yeast, rather than the filamentous form.
- Paul will reply to Val.
Following up on previous actions
Update on Obsolete filtering obsolete Uniprot entries at each PAINT release
https://github.com/pantherdb/fullgo_paint_update/issues/46
Update on Taxon constraints
The test version is available at http://panthertest3.med.usc.edu:8083/
We plan to release it before the GO meeting.
Questions discussed last time:
- What to do when TC is violated in the experimental annotation? Example:http://amigo.geneontology.org/amigo/gene_product/FB:FBgn0003507
- What to do when incorrect qualifier is used? Example: http://amigo.geneontology.org/amigo/gene_product/MGI:MGI:2137670
- Taxon constraint file may not be perfect.