Difference between revisions of "5 May 2020 PAINT Conference Call"

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(Taxon constraints)
(Taxon constraints)
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We plan to release it before the GO meeting.
 
We plan to release it before the GO meeting.
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Related questions:
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#What to do when TC is violated in the experimental annotation? Example:http://amigo.geneontology.org/amigo/gene_product/FB:FBgn0003507
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#What to do when incorrect qualifier is used? Example: http://amigo.geneontology.org/amigo/gene_product/MGI:MGI:2137670
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#Taxon constraint file may not be perfect.
  
 
==GAF 2.2 more qualifiers==
 
==GAF 2.2 more qualifiers==

Revision as of 14:33, 4 May 2020

Present

Following up on previous actions

Obsolete Uniprot entries should be filtered at each PAINT release

Pascale created a ticket: https://github.com/pantherdb/fullgo_paint_update/issues/46

Alex linked the PAINT error report; is this enough to implement the filter ?

Taxon constraints

The test version is available at http://panthertest3.med.usc.edu:8083/

We plan to release it before the GO meeting.

Related questions:

  1. What to do when TC is violated in the experimental annotation? Example:http://amigo.geneontology.org/amigo/gene_product/FB:FBgn0003507
  2. What to do when incorrect qualifier is used? Example: http://amigo.geneontology.org/amigo/gene_product/MGI:MGI:2137670
  3. Taxon constraint file may not be perfect.

GAF 2.2 more qualifiers

How are we going to handle these in PAINT?

https://github.com/pantherdb/fullgo_paint_update/issues/45

PANTHER 15 migration in PAINT

Discussion points