5 May 2020 PAINT Conference Call: Difference between revisions
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We plan to release it before the GO meeting. | We plan to release it before the GO meeting. | ||
Related questions: | |||
#What to do when TC is violated in the experimental annotation? Example:http://amigo.geneontology.org/amigo/gene_product/FB:FBgn0003507 | |||
#What to do when incorrect qualifier is used? Example: http://amigo.geneontology.org/amigo/gene_product/MGI:MGI:2137670 | |||
#Taxon constraint file may not be perfect. | |||
==GAF 2.2 more qualifiers== | ==GAF 2.2 more qualifiers== | ||
Revision as of 18:33, 4 May 2020
Present
Following up on previous actions
Obsolete Uniprot entries should be filtered at each PAINT release
Pascale created a ticket: https://github.com/pantherdb/fullgo_paint_update/issues/46
Alex linked the PAINT error report; is this enough to implement the filter ?
Taxon constraints
The test version is available at http://panthertest3.med.usc.edu:8083/
We plan to release it before the GO meeting.
Related questions:
- What to do when TC is violated in the experimental annotation? Example:http://amigo.geneontology.org/amigo/gene_product/FB:FBgn0003507
- What to do when incorrect qualifier is used? Example: http://amigo.geneontology.org/amigo/gene_product/MGI:MGI:2137670
- Taxon constraint file may not be perfect.
GAF 2.2 more qualifiers
How are we going to handle these in PAINT?
https://github.com/pantherdb/fullgo_paint_update/issues/45