5 May 2020 PAINT Conference Call

From GO Wiki
Revision as of 14:33, 4 May 2020 by Mi (talk | contribs) (Taxon constraints)

Jump to: navigation, search


Following up on previous actions

Obsolete Uniprot entries should be filtered at each PAINT release

Pascale created a ticket: https://github.com/pantherdb/fullgo_paint_update/issues/46

Alex linked the PAINT error report; is this enough to implement the filter ?

Taxon constraints

The test version is available at http://panthertest3.med.usc.edu:8083/

We plan to release it before the GO meeting.

Related questions:

  1. What to do when TC is violated in the experimental annotation? Example:http://amigo.geneontology.org/amigo/gene_product/FB:FBgn0003507
  2. What to do when incorrect qualifier is used? Example: http://amigo.geneontology.org/amigo/gene_product/MGI:MGI:2137670
  3. Taxon constraint file may not be perfect.

GAF 2.2 more qualifiers

How are we going to handle these in PAINT?


PANTHER 15 migration in PAINT

Discussion points