5 May 2020 PAINT Conference Call
Present
Following up on previous actions
Obsolete Uniprot entries should be filtered (ie not exported in GAFs generated by PAINT) at each PAINT release
Pascale created a ticket: https://github.com/pantherdb/fullgo_paint_update/issues/46
Alex linked the PAINT error report; is this enough to implement the filter ? --- Discussion:
- Alex can provide this every month
- Dustin will look into making some meta data file in the PAINT repo https://github.com/pantherdb/db-PAINT
Taxon constraints
The test version is available at http://panthertest3.med.usc.edu:8083/
We plan to release it before the GO meeting.
Related questions:
- What to do when TC is violated in the experimental annotation? Example:http://amigo.geneontology.org/amigo/gene_product/FB:FBgn0003507
- What to do when incorrect qualifier is used? Example: http://amigo.geneontology.org/amigo/gene_product/MGI:MGI:2137670
- Taxon constraint file may not be perfect.
GAF 2.2 more qualifiers
How are we going to handle these in PAINT?
https://github.com/pantherdb/fullgo_paint_update/issues/45
PANTHER 15 migration in PAINT
Will do the migration