7 Dec 2021 PAINT Conference Call

Present

Marc, Dustin, Pascale, Anushya, Huaiyu

Agenda

Recuration families with IBA conflict at the leaf nodes

IBAs are propagated to the leaf nodes even if there is experimental annotation with a conflict NOT qualifier to the same gene. Anushya curated a list of nodes with conflict.

• Here is the file with nodes to be curated: https://drive.google.com/file/d/1btEkCOzoTERf-NBgN-7VBKUB86_y1unh/view?usp=sharing
• Here are the ones that have been curated with notes: https://drive.google.com/file/d/1fDfbSOXGsi_pAiXUj633nrTYpS9WiFpG/view?usp=sharing
• Here are some examples where IBAs are allowed to stay.

https://docs.google.com/document/d/1YpUQtmZe5elOs94_Aj2AeVax5AsIEyzKkO6ZNKz-yPg/edit?usp=sharing

How annotations with conflicting qualifiers are displayed in PAINT Matrix

There are a few cases where there are conflicting annotations. Example PTHR43003(PTN000780612) with experimental NOT annotation for general term GO:0006284 and positive annotation for more specific term GO:0006285. In this case, annotation is displayed with pink dot so that curators can easily take note of conflicting qualifiers.

• Should display be changed when curator adds annotation?