8 Sept 2009 RefGen Phone Conference (Archived)

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Present

PAINT-based annotations

  • PAINT should be available for all curators to download. We may set up some webex sessions to demo the software.

For now, this is what it looks like for the MSH family:

File:MSH-PAINT-screenshot.png
MSH family
  • Jim and Daniel have uploaded a GAF file generated by PAINT for the MSH family:

http://gowiki.tamu.edu/wiki/index.php/Category:MSH_family_PANTHER11361

The format is the same as what we use for the annotation jamborees. The names of the columns on this page correspond to the family (PANTHER11361) as all as groups of descendants (foe eg, AN24 is 'ancestor 24')

  • One suggestion would be to distinguish the PAINT-derived ISS from all others.
  • We suggest that curators look at a few families and decide whether they can import the annotation in a semi-automated fashion.

PAINT-generated GAF files

  • The PAINT-generated annotations are written to a GAF file.

[ACTION ITEM]: Is every group able to import GAF files? Please - everyone report back on this.

  • Those annotations would be treated like InterPro2GO annotations: not systematically manually reviewed bu MOD curators (since they are manually assigned by PAINT curators)

Using UniProt IDs for the gp2protein file

  • Action Item: (carried over from previous call): Emily: will provide a list of mappings to secondary (obsolete) IDSs. Many MODs have issues with that.

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