9 FEB 2010 RefGen Phone Conference (Archived): Difference between revisions
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==PAINT demo== | ==PAINT demo== | ||
Ed Lee, Berkeley | |||
==Plan for annotation status reporting tool== | |||
Kara and her group have started to work on a tool that would display the annotation status of the Panther families. There will be a regularly updated web page that will show the following information: | |||
# Panther family ID | |||
# Date selected for concurrent annotation | |||
# Date Panther family last annotated | |||
# Number of members | |||
# Number of RefG members | |||
# Number of members with EXP | |||
# Date more recent member last annotated | |||
(we could add 'date comprehensively annotated' for groups that can provide this information) | |||
* Alerts: | |||
** Tree curators should be alerted when the Date in Column 6 is more recent than the date in Column 2. | |||
** When the Panther families are modified (once-twice per year), there should be a check to verify that the members are still the same. If there are additions or deletions: there should be an alert for curators annotations. We may be able to automate part of the required modifications to annotations. | |||
* Annotations to nodes: All the previous part of the script is just a report based on the trees and the GAF files. However in some cases we annotate to nodes rather to entire trees. There needs to be a way to request a report for a specific tree node. This will be done as a second step. | |||
==Branding Ref.genome annotation data in GOC and within each group== | ==Branding Ref.genome annotation data in GOC and within each group== |
Revision as of 20:04, 3 February 2010
Present
- GOA:
- BHF-UCL:
- MGI:
- RGD:
- Flybase:
- dictyBase:
- TAIR:
- AgBase:
- SGD:
- pombe
- Ecoli:
- Wormbase:
- ZFIN:
- PPOD:
- Berkeley:
Lung curation targets
- Discuss the priorities (Dec, Nov, Jan) and goal (March 1st)
- Can everyone have the curation targets annotated by then?
- GOA:
- BHF-UCL:
- MGI:
- RGD:
- Flybase:
- dictyBase:
- TAIR:
- AgBase:
- SGD:
- pombe
- Ecoli:
- Wormbase:
- ZFIN:
PAINT demo
Ed Lee, Berkeley
Plan for annotation status reporting tool
Kara and her group have started to work on a tool that would display the annotation status of the Panther families. There will be a regularly updated web page that will show the following information:
- Panther family ID
- Date selected for concurrent annotation
- Date Panther family last annotated
- Number of members
- Number of RefG members
- Number of members with EXP
- Date more recent member last annotated
(we could add 'date comprehensively annotated' for groups that can provide this information)
- Alerts:
- Tree curators should be alerted when the Date in Column 6 is more recent than the date in Column 2.
- When the Panther families are modified (once-twice per year), there should be a check to verify that the members are still the same. If there are additions or deletions: there should be an alert for curators annotations. We may be able to automate part of the required modifications to annotations.
- Annotations to nodes: All the previous part of the script is just a report based on the trees and the GAF files. However in some cases we annotate to nodes rather to entire trees. There needs to be a way to request a report for a specific tree node. This will be done as a second step.
Branding Ref.genome annotation data in GOC and within each group
Rama started a wiki page to collect ideas. http://gocwiki.geneontology.org/index.php/Ideas_for_publicizing_Ref.Genome_Annotation_Data
Back to Reference Genome Conference_Calls Page