9 FEB 2010 RefGen Phone Conference (Archived): Difference between revisions
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# Date more recent member last annotated | # Date more recent member last annotated | ||
We could add 'date comprehensively annotated' for groups that can provide this information: who currently captures that and could generate a file with such information: | |||
* GOA: Yes | |||
* BHF-UCL: | |||
* MGI: | |||
* RGD: | |||
* Flybase: | |||
* dictyBase: Yes (we capture curation status for the entire 'gene' curation, but could use that for now) | |||
* TAIR: | |||
* AgBase: | |||
* SGD: | |||
* pombe | |||
* Ecoli: | |||
* Wormbase: | |||
* ZFIN: | |||
* Alerts: | * Alerts: |
Revision as of 20:11, 3 February 2010
Present
- GOA:
- BHF-UCL:
- MGI:
- RGD:
- Flybase:
- dictyBase:
- TAIR:
- AgBase:
- SGD:
- pombe
- Ecoli:
- Wormbase:
- ZFIN:
- PPOD:
- Berkeley:
Lung curation targets
- Discuss the priorities (Dec, Nov, Jan) and goal (March 1st)
- Can everyone have the curation targets annotated by then?
- GOA:
- BHF-UCL:
- MGI:
- RGD:
- Flybase:
- dictyBase:
- TAIR:
- AgBase:
- SGD:
- pombe
- Ecoli:
- Wormbase:
- ZFIN:
PAINT demo
Ed Lee, Berkeley
Plan for annotation status reporting tool
Kara and her group have started to work on a tool that would display the annotation status of the Panther families. There will be a regularly updated web page that will show the following information:
- Panther family ID
- Date selected for concurrent annotation
- Date Panther family last annotated
- Number of members
- Number of RefG members
- Number of members with EXP
- Date more recent member last annotated
We could add 'date comprehensively annotated' for groups that can provide this information: who currently captures that and could generate a file with such information:
- GOA: Yes
- BHF-UCL:
- MGI:
- RGD:
- Flybase:
- dictyBase: Yes (we capture curation status for the entire 'gene' curation, but could use that for now)
- TAIR:
- AgBase:
- SGD:
- pombe
- Ecoli:
- Wormbase:
- ZFIN:
- Alerts:
- Tree curators should be alerted when the Date in Column 6 is more recent than the date in Column 2.
- When the Panther families are modified (once-twice per year), there should be a check to verify that the members are still the same. If there are additions or deletions: there should be an alert for curators annotations. We may be able to automate part of the required modifications to annotations.
- Annotations to nodes: All the previous part of the script is just a report based on the trees and the GAF files. However in some cases we annotate to nodes rather to entire trees. There needs to be a way to request a report for a specific tree node. This will be done as a second step.
Branding Ref.genome annotation data in GOC and within each group
Rama started a wiki page to collect ideas. http://gocwiki.geneontology.org/index.php/Ideas_for_publicizing_Ref.Genome_Annotation_Data
Back to Reference Genome Conference_Calls Page