9 FEB 2010 RefGen Phone Conference (Archived): Difference between revisions
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==Lung curation targets== | ==Lung curation targets== | ||
# Discuss the priorities (Dec, Jan, and fgf10 from November) and goal (March 1st) | # Discuss the priorities (Dec, Jan, and fgf10 from November) and goal (March 1st) | ||
# <font = "red">Please answer prior to the call</font>Can everyone have the curation targets annotated by then? | |||
# Can everyone have the curation targets annotated by then? | |||
* GOA: | * GOA: | ||
* BHF-UCL: | * BHF-UCL: | ||
Line 48: | Line 47: | ||
# Date more recent member last annotated | # Date more recent member last annotated | ||
We could add 'date comprehensively annotated' for groups that can provide this information: who currently captures that and could generate a file with such information: | We could add 'date comprehensively annotated' for groups that can provide this information: | ||
<font = "red">Please answer prior to the call</font>: who currently captures that and could generate a file with such information: | |||
* GOA: Yes | * GOA: Yes | ||
* BHF-UCL: | * BHF-UCL: | ||
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Rama started a wiki page to collect ideas. | Rama started a wiki page to collect ideas. | ||
http://gocwiki.geneontology.org/index.php/Ideas_for_publicizing_Ref.Genome_Annotation_Data | http://gocwiki.geneontology.org/index.php/Ideas_for_publicizing_Ref.Genome_Annotation_Data | ||
<font = "red">Use this page to provide suggestions</font> | |||
---- | ---- | ||
Back to Reference Genome [[Conference_Calls]] Page | Back to Reference Genome [[Conference_Calls]] Page |
Revision as of 20:13, 3 February 2010
Present
- GOA:
- BHF-UCL:
- MGI:
- RGD:
- Flybase:
- dictyBase:
- TAIR:
- AgBase:
- SGD:
- pombe
- Ecoli:
- Wormbase:
- ZFIN:
- PPOD:
- Berkeley:
Lung curation targets
- Discuss the priorities (Dec, Jan, and fgf10 from November) and goal (March 1st)
- Please answer prior to the callCan everyone have the curation targets annotated by then?
- GOA:
- BHF-UCL:
- MGI:
- RGD:
- Flybase:
- dictyBase:
- TAIR:
- AgBase:
- SGD:
- pombe
- Ecoli:
- Wormbase:
- ZFIN:
PAINT demo
Ed Lee, Berkeley
Plan for annotation status reporting tool
Kara and her group have started to work on a tool that would display the annotation status of the Panther families. There will be a regularly updated web page that will show the following information:
- Panther family ID
- Date selected for concurrent annotation
- Date Panther family last annotated
- Number of members
- Number of RefG members
- Number of members with EXP
- Date more recent member last annotated
We could add 'date comprehensively annotated' for groups that can provide this information:
Please answer prior to the call: who currently captures that and could generate a file with such information:
- GOA: Yes
- BHF-UCL:
- MGI:
- RGD:
- Flybase:
- dictyBase: Yes (we capture curation status for the entire 'gene' curation, but could use that for now)
- TAIR:
- AgBase:
- SGD:
- pombe
- Ecoli:
- Wormbase:
- ZFIN:
- Alerts:
- Tree curators should be alerted when the Date in Column 6 is more recent than the date in Column 2.
- When the Panther families are modified (once-twice per year), there should be a check to verify that the members are still the same. If there are additions or deletions: there should be an alert for curators annotations. We may be able to automate part of the required modifications to annotations.
- Annotations to nodes: All the previous part of the script is just a report based on the trees and the GAF files. However in some cases we annotate to nodes rather to entire trees. There needs to be a way to request a report for a specific tree node. This will be done as a second step.
Branding Ref.genome annotation data in GOC and within each group
Rama started a wiki page to collect ideas. http://gocwiki.geneontology.org/index.php/Ideas_for_publicizing_Ref.Genome_Annotation_Data Use this page to provide suggestions
Back to Reference Genome Conference_Calls Page