Difference between revisions of "9 July 2019 PAINT Conference Call"

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(Families to review- Panther 14)
(Review action items from last call)
 
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* '''ACTION ITEM: Release stats '''Dustin: For the PANTHER 14 release they will produce a table with the diff of number of annotations per family between Panther13 and Panther14.
 
* '''ACTION ITEM: Release stats '''Dustin: For the PANTHER 14 release they will produce a table with the diff of number of annotations per family between Panther13 and Panther14.
 
** Done, see https://drive.google.com/drive/folders/1MrtIQVmtdfd6gJhVcEfofXrU0IIPnOW7
 
** Done, see https://drive.google.com/drive/folders/1MrtIQVmtdfd6gJhVcEfofXrU0IIPnOW7
** Need a bit more documentation
+
** Documentation here: https://docs.google.com/document/d/1Coj6dnuUfKT7qGVNWjFTSdR0lKD3fZb_winZSVFHoJ8
 
*'''ACTION ITEM''' Anushya: Remove 'protein binding' from terms we can propagate in PAINT.
 
*'''ACTION ITEM''' Anushya: Remove 'protein binding' from terms we can propagate in PAINT.
 
** Done.  
 
** Done.  

Latest revision as of 11:46, 9 July 2019


Review action items from last call

New PAINT version: 2019_06_28_1: New features:

Anushya: demo domains on MSA ?

  1. Fix to resolve issue with software not saving some books.
  2. First pass of displaying domain information in MSA panel. Mouse over the domains to view the domain name, accession and range. There are 2 options:
    • Domains overlaid over the MSA. Dots and dashes are colored lighter.
    • Domain strips without the MSA information.
  3. The software now retrieves and displays PANTHER Library version 14.1
  4. Annotations to the following terms is not permitted from the PAINT client:
    • GO:0005515 protein binding
    • GO:0005488 binding
      • If annotations to the above terms are encountered in the data store, these are ignored by the PAINT server and also not reported via web services.
  5. Changed order of radio buttons in Manage Books dialog so that search by book id appears first
  6. Fixed sorting in Manage Books dialog after sorting by column
  7. Fixed annotation panel display issue after comment dialog is displayed


Families to review- Panther 14

https://drive.google.com/drive/folders/1MrtIQVmtdfd6gJhVcEfofXrU0IIPnOW7

Specifically, this sheet: https://docs.google.com/spreadsheets/d/1SO8D0PhWEjpTv8rDIXkY8yJf-hhKB0t1Q5n18vFqH2Y

Minutes

Discussion

IKR annotations

  • Huaiyu: requirement is to include IKR annotations at the leaf level from the GO annotation table -> leaf gene that has a NOT annotation. Should behave the same as and EXP NOT annotation
  • Anushya: need to look into a solution for this

Present

Dustin, Marc, Michael, Huaiyu, Anushya, Pascale