9 NOV 2010 RefGen Phone Conference (Archived): Difference between revisions

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===PANTREE===
===PANTREE===
(Paul): Website that allows to browse all annotations, loaded from cvs/PAINT
* Can click on any family
* Pantree.org
* Pantree.org
* all curated families are here: http://pantree.org/tree/treeList.jsp
* all curated families are here: http://pantree.org/tree/treeList.jsp


===Plan for tree curation===
===Plan for tree curation===

Revision as of 15:10, 9 November 2010

Present

  • dictyBase: Pascale
  • PPOD: Mike, Kara
  • Panther: Paul
  • MGI: Judy, Li, Dmitry, Mary
  • UCL: Ruth, Varsha
  • wormbase: Kimberly
  • GOA: Yasmin, Becky
  • SGD: Rama
  • RGD:
  • Berkeley: Chris, Suzi
  • TAIR: Tanya


PANTREE

(Paul): Website that allows to browse all annotations, loaded from cvs/PAINT

Plan for tree curation

Rama, Li, Dmitry, and maybe others will start doing tree annotations. In December we should make a big push to annotate families that were curated over the past 4 years, or those that have lots of EXP data, or those that have very little.


Issues with annotated trees

MSH2 issues

http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/gene-associations/submission/paint/PTHR11361/PTHR11361.save.txt

p53 issues

http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/gene-associations/submission/paint/PTHR11447/PTHR11447.save.txt


Status of the wnt project