9 NOV 2010 RefGen Phone Conference (Archived)

Present

• dictyBase: Pascale
• PPOD: Mike, Kara
• Panther: Paul
• MGI: Judy, Li, Dmitry, Mary
• UCL: Ruth, Varsha
• wormbase: Kimberly, Ranjana
• GOA: Yasmin, Becky
• SGD: Rama
• RGD:
• Berkeley: Chris, Suzi
• TAIR: Tanya

PanTree

(Paul): Website that allows to browse all annotations, loaded from cvs/PAINT

• Pantree.org
• all curated families are here: http://pantree.org/tree/treeList.jsp
• On family pages there is a link to the tree and a link to the notes; there are also annotations to sequences IDs from all sequences from the tree; and annotations to the different nodes

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Plan for tree curation

Rama, Li, Dmitry, and maybe others will start doing tree annotations. In December we should make a big push to annotate families that were curated over the past 4 years, or those that have lots of EXP data, or those that have very little.

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Issues with annotated trees

MSH2 issues

• http://pantree.org/tree/family.jsp?accession=PTHR11361
• http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/gene-associations/submission/paint/PTHR11361/PTHR11361.save.txt

p53 issues

• http://pantree.org/tree/family.jsp?accession=PTHR11447

• http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/gene-associations/submission/paint/PTHR11447/PTHR11447.save.txt

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