9 NOV 2010 RefGen Phone Conference (Archived): Difference between revisions
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* TAIR: Tanya | * TAIR: Tanya | ||
Action item: | |||
* Kara and Mike will get a list of conserved genes for primary annotations over the new few weeks | |||
* Paul: start SOP documentation - update the existing documentation | |||
===PanTree=== | ===PanTree=== |
Revision as of 16:07, 9 November 2010
Present
- dictyBase: Pascale
- PPOD: Mike, Kara
- Panther: Paul
- MGI: Judy, Li, Dmitry, Mary
- UCL: Ruth, Varsha
- wormbase: Kimberly, Ranjana
- GOA: Yasmin, Becky
- SGD: Rama
- RGD:
- Berkeley: Chris, Suzi
- TAIR: Tanya
Action item:
- Kara and Mike will get a list of conserved genes for primary annotations over the new few weeks
- Paul: start SOP documentation - update the existing documentation
PanTree
(Paul): Website that allows to browse all annotations, loaded from cvs/PAINT
- Pantree.org
- all curated families are here: http://pantree.org/tree/treeList.jsp
- On family pages there is a link to the tree and a link to the notes; there are also annotations to sequences IDs from all sequences from the tree; and annotations to the different nodes
Plan for tree curation
Rama, Li, Dmitry, and maybe others will start doing tree annotations. In December we should make a big push to annotate families that were curated over the past 4 years, or those that have lots of EXP data, or those that have very little.
Issues with annotated trees
MSH2 issues
- http://pantree.org/tree/family.jsp?accession=PTHR11361
- http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/gene-associations/submission/paint/PTHR11361/PTHR11361.save.txt
p53 issues
Status of the wnt project
http://gocwiki.geneontology.org/index.php/Wnt_signaling_Pathway
Varsha
- Batch 1 has been annotated by most MODs
- Batch 2: not sure how much has been annotated
- PAINT curation status (Mike)