9 NOV 2010 RefGen Phone Conference (Archived): Difference between revisions

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Line 5: Line 5:
* MGI: Judy, Li, Dmitry, Mary
* MGI: Judy, Li, Dmitry, Mary
* UCL: Ruth, Varsha
* UCL: Ruth, Varsha
* wormbase: Kimberly
* wormbase: Kimberly, Ranjana
* GOA: Yasmin, Becky
* GOA: Yasmin, Becky
* SGD: Rama
* SGD: Rama

Revision as of 15:22, 9 November 2010

Present

  • dictyBase: Pascale
  • PPOD: Mike, Kara
  • Panther: Paul
  • MGI: Judy, Li, Dmitry, Mary
  • UCL: Ruth, Varsha
  • wormbase: Kimberly, Ranjana
  • GOA: Yasmin, Becky
  • SGD: Rama
  • RGD:
  • Berkeley: Chris, Suzi
  • TAIR: Tanya


PanTree

(Paul): Website that allows to browse all annotations, loaded from cvs/PAINT

  • Pantree.org
  • all curated families are here: http://pantree.org/tree/treeList.jsp
  • On family pages there is a link to the tree and a link to the notes; there are also annotations to sequences IDs from all sequences from the tree; and annotations to the different nodes

Plan for tree curation

Rama, Li, Dmitry, and maybe others will start doing tree annotations. In December we should make a big push to annotate families that were curated over the past 4 years, or those that have lots of EXP data, or those that have very little.


Issues with annotated trees

MSH2 issues

http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/gene-associations/submission/paint/PTHR11361/PTHR11361.save.txt

p53 issues

http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/gene-associations/submission/paint/PTHR11447/PTHR11447.save.txt


Status of the wnt project