9 NOV 2010 RefGen Phone Conference (Archived)

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Present

  • dictyBase: Pascale
  • PPOD: Mike, Kara
  • Panther: Paul
  • MGI: Judy, Li, Dmitry, Mary
  • UCL: Ruth, Varsha
  • wormbase: Kimberly, Ranjana
  • GOA: Yasmin, Becky
  • SGD: Rama
  • RGD:
  • Berkeley: Chris, Suzi
  • TAIR: Tanya

Action item:

  • Kara and Mike will get a list of conserved genes for primary annotations over the new few weeks
  • Paul: start SOP documentation - update the existing documentation

PanTree

(Paul): Website that allows to browse all annotations, loaded from cvs/PAINT

  • Pantree.org
  • all curated families are here: http://pantree.org/tree/treeList.jsp
  • On family pages there is a link to the tree and a link to the notes; there are also annotations to sequences IDs from all sequences from the tree; and annotations to the different nodes

Plan for tree curation

Rama, Li, Dmitry, and maybe others will start doing tree annotations. In December we should make a big push to annotate families that were curated over the past 4 years, or those that have lots of EXP data, or those that have very little.


Issues with annotated trees

MSH2 issues

p53 issues


Status of the wnt project

http://gocwiki.geneontology.org/index.php/Wnt_signaling_Pathway
Varsha

  • Batch 1 has been annotated by most MODs
  • Batch 2: not sure how much has been annotated
  • PAINT curation status (Mike)