AHWG-20080520

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Present

Seth, Amelia, Rama, Ben, Jane

Time

~30 minutes

Agenda

Went over Jane's email for as much time as we had her; got through all of the majors. Summary:

Major

Reference Genome display (major priority for 1.6)
Annotation table (bulk download of annotation files by species/kingdom etc)
Wiki-style user annotation (Jim Hu's API)
AmiGO web services?
X-product visualisation
Graphical tree-view (improve on GraphViz)
Flexible annotation browsing e.g. by qualifier
Improve documentation

Minor

Display issues:
- Minor:
  - comments
  - selecting multiple terms in tree
  - spell out evidence code acronyms
  - make NOT qualifier more prominent
  - add 'experimental' evidence group
  - reducing whitespace in results
- Larger:
  - Highlight a list of GO terms in the tree
  - More download options
  - BLAST post-filtering results
Searcing
- mis-spelled terms
- autocomplete
- customising data displayed in results
- search/browse within a subset (e.g. slim) only
DB issues
- remove fake root

Discussion

It would be nice to try a quick release, so we'll try and keep this one light.
Majors:
- 1, 3, 7 already mostly finished
- 2 needs input from Chris
- 4 is a goal to works towards
- 5 already partially done (demo from SLC), but see 6
- The visualization system in general needs work, Seth has had on back burned for a while to get something more powerful than graphviz.
- 8 docs are being linked out to wiki so we can change them independent of release schedule.
What is release schedule for current bugfix (rama)
- Depends on WPWG tesing (seth)
- how about make an obo-edit-like sign off sheet (amelia)
[AFTER MEETING] The gene_associations file is going to have 2 new columns. Is AmiGO ready?

Action Items

Put together a sign-off sheet for bug release (Seth)
- Email WG detailed list of things to check for.
Amelia and Seth to talk about low-hanging fruit in second tier suggestions. (Seth and Amelia)
Follow up on Rama's offline discussion point (see above)

Previous Action Items

send notes along to software group
- amigo data structs (amelia)
- ref gen and DBIx::Class (seth)
check to see what times are better for the group [DONE]
put all new stuff in next release tracker (seth)
clean tracker more