AmiGO: Difference between revisions

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#REDIRECT [[AmiGO_2]]
Welcome to AmiGO's wiki home on the web. This is the central public repository for AmiGO news and the locations of help, FAQs, manuals, articles, technical information, and working group information.
Welcome to AmiGO's wiki home on the web. This is the central public repository for AmiGO news and the locations of help, FAQs, manuals, articles, technical information, and working group information.


== Versions ==
== Versions ==
The [[AmiGO_1_5 | current]] stable version is [[AmiGO_1_5 | 1.5]] (1.5.4.0, tagged amigo_1_5_4_0). It is available for direct download at [http://sourceforge.net/project/showfiles.php?group_id=36855 SourceForge.net ].
The [[AmiGO_1_7 | current]] stable version is [[AmiGO_1_7 | 1.7]] (1.7.0.0, tagged amigo_1_7_0_0). It is available for direct download at [http://sourceforge.net/project/showfiles.php?group_id=36855 SourceForge.net ].


Information on the [[AmiGO_1_6 | upcoming]] version is at the [[AmiGO_1_6 | 1.6]] site. There is also an article and link to the current [[ AmiGO_Beta | beta]] site.
Information on the [[AmiGO_1_8 | upcoming]] version is at the [[AmiGO_1_8 | 1.8]] site. There is also an article and link to the current [[ AmiGO_Beta | beta]] site.


Version numbers are as follows:
Version numbers are as follows:
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== Help ==
== Help ==
There are no AmiGO specific help pages at this time, but you might want to consider the GO Helpdesk.


=== FAQs ===
=== FAQs ===


Go [[AmiGO_FAQs | here]] to looks at frequently asked questions about AmiGO.
Go [[AmiGO_FAQs | here]] to look at frequently asked questions about AmiGO. Over time, this will probably be absorbed into the AmiGO manual.


=== Manuals ===
=== Manual ===


AmiGO is broken in several discrete components that interact with each other. Below is specific help and instructions for each as well as an overview of general AmiGO functionality.
AmiGO is a collection of several discrete components that interact with each other.  
There is a [[AmiGO_Manual:_Overview | manual]] available for an overview of AmiGO and it's abilities. A good place to get oriented.


==== [[AmiGO_Manual:_Overview | Overview]] ====
== Articles ==
A general overview of AmiGO and it's abilities. Go here to ger orientation for AmiGO.


A database filtering to the use and meaning of the database filters used by AmiGO when interacting with the GO database.
[http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2639003 Application note] in Bioinformatics.


Things that you can download...
== Working Group Information ==


==== [[AmiGO_Manual:_Term_Details | Term Details]] ====
[[AmiGO_Hub | AmiGO Hub Working Group]]
Term details blurb...


==== [[AmiGO_Manual:_Gene_Product_Details | Gene Product Details]] ====
[[Web_Presence_Working_Group | Web Presence Working Group]]
Gene product details blurb...
 
==== [[AmiGO_Manual:_Bar_Chart | Bar Chart Details]] ====
Bar chart blurb...
 
==== [[AmiGO_Manual:_GraphViz | GraphViz]] ====
GraphViz blurb...
 
==== [[AmiGO_Manual:_BLAST | BLAST]] ====
The AmiGO BLAST tool (formerly known as GOst) can be used to...
 
==== [[AmiGO_Manual:_Term_Enrichment | Term Enrichment]] ====
The AmiGO Term Enrichment tool can be used to...
 
==== [[AmiGO_Manual:_Slimmer | Slimmer]] ====
The AmiGO Slimmer tool can be used to...
 
== Articles ==
None at this time.
 
== Technical articles ==
There are no technical articles at this time, but some of the information on the database schema might be interesting.
 
== Working Group Information ==
Try the [http://gocwiki.geneontology.org/index.php/AmiGO_working_group Web Presence Working Group]




[[Category:AmiGO]]
[[Category:AmiGO_Manual]]
[[Category:AmiGO_working_group]]
[[Category:AmiGO_working_group]]
[[Category:AmiGO_Manual]]
[[Category:AmiGO]]

Latest revision as of 14:00, 16 May 2014

Redirect to:

Welcome to AmiGO's wiki home on the web. This is the central public repository for AmiGO news and the locations of help, FAQs, manuals, articles, technical information, and working group information.

Versions

The current stable version is 1.7 (1.7.0.0, tagged amigo_1_7_0_0). It is available for direct download at SourceForge.net .

Information on the upcoming version is at the 1.8 site. There is also an article and link to the current beta site.

Version numbers are as follows:

A.B.C.D
A = Major release
B = Standard release (general testing)
C = Bugfix release (test of fixes)
D = Text fix release (minor changes that don't need testing)

The last two numbers are mostly for internal use.

Help

FAQs

Go here to look at frequently asked questions about AmiGO. Over time, this will probably be absorbed into the AmiGO manual.

Manual

AmiGO is a collection of several discrete components that interact with each other. There is a manual available for an overview of AmiGO and it's abilities. A good place to get oriented.

Articles

Application note in Bioinformatics.

Working Group Information

AmiGO Hub Working Group

Web Presence Working Group