AmiGO: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
(new page)
(Redirected page to AmiGO 2)
 
(25 intermediate revisions by 2 users not shown)
Line 1: Line 1:
Welcome to AmiGO's wiki home on the web. This is the central public repository for AmiGO news, help, manuals, articles, technical information, and working group information.
#REDIRECT [[AmiGO_2]]


== News ==
Welcome to AmiGO's wiki home on the web. This is the central public repository for AmiGO news and the locations of help, FAQs, manuals, articles, technical information, and working group information.
A new version of AmiGO is currently being tested. It can be found at the BBOP testing site.[http://toy.lbl.gov:9012/cgi-bin/amigo/go.cgi]


== Help ==
== Versions ==
There are no AmiGO specific help pages at this time, but you might want to consider the GO Helpdesk.
The [[AmiGO_1_7 | current]] stable version is [[AmiGO_1_7 | 1.7]] (1.7.0.0, tagged amigo_1_7_0_0). It is available for direct download at [http://sourceforge.net/project/showfiles.php?group_id=36855 SourceForge.net ].


== Manuals ==
Information on the [[AmiGO_1_8 | upcoming]] version is at the [[AmiGO_1_8 | 1.8]] site. There is also an article and link to the current [[ AmiGO_Beta | beta]] site.


Version numbers are as follows:


=== General AmiGO Help ===
A.B.C.D
AmiGO is a web based application which allows the user to browse, query, and visualize data from the Gene Ontology, or any ontology in OBO format. AmiGO can be accessed [http://amigo.geneontology.org online]. AmiGO is open source software and can be downloaded and installed as part of the go-dev  CVS repository from the Gene Ontology SourceForge.net page.


==== [[AmiGO_Manual_Overview | Overview]] ====
A = Major release
A general overview of AmiGO and it's abilities. Go here to ger orientation for AmiGO.
B = Standard release (general testing)
C = Bugfix release (test of fixes)
D = Text fix release (minor changes that don't need testing)


==== [[AmiGO_Manual_Database_Filtering | Database Filter]] ====
The last two numbers are mostly for internal use.
A database filtering to the use and meaning of the database filters used by AmiGO when interacting with the GO database.


=== AmiGO Component Help ===
== Help ==
AmiGO is broken in several discrete components that interact with each other. Below is specific help and instructions for each


==== [[AmiGO_Manual_BLAST | BLAST]] ====
=== FAQs ===
The AmiGO BLAST tool (formerly known as GOst) can be used to...


==== [[AmiGO_Manual_Term_Enrichment | Term Enrichment]] ====
Go [[AmiGO_FAQs | here]] to look at frequently asked questions about AmiGO. Over time, this will probably be absorbed into the AmiGO manual.
The AmiGO Term Enrichment tool can be used to...


==== [[AmiGO_Manual_Slimmer | Slimmer]] ====
=== Manual ===
The AmiGO Slimmer tool can be used to...
 
AmiGO is a collection of several discrete components that interact with each other.
There is a [[AmiGO_Manual:_Overview | manual]] available for an overview of AmiGO and it's abilities. A good place to get oriented.


== Articles ==
== Articles ==
None at this time.


== Technical articles ==
[http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2639003 Application note] in Bioinformatics.
There are no technical articles at this time, but some of the information on the database schema might be interesting.


== Working Group Information ==
== Working Group Information ==
Try the [http://gocwiki.geneontology.org/index.php/AmiGO_working_group Web Presence Working Group]
 
[[AmiGO_Hub | AmiGO Hub Working Group]]
 
[[Web_Presence_Working_Group | Web Presence Working Group]]




[[Category:AmiGO]]
[[Category:AmiGO]]
[[Category:AmiGO_Manual]]
[[Category:AmiGO_Manual]]
[[Category:AmiGO_working_group]]

Latest revision as of 14:00, 16 May 2014

Redirect to:

Welcome to AmiGO's wiki home on the web. This is the central public repository for AmiGO news and the locations of help, FAQs, manuals, articles, technical information, and working group information.

Versions

The current stable version is 1.7 (1.7.0.0, tagged amigo_1_7_0_0). It is available for direct download at SourceForge.net .

Information on the upcoming version is at the 1.8 site. There is also an article and link to the current beta site.

Version numbers are as follows:

A.B.C.D
A = Major release
B = Standard release (general testing)
C = Bugfix release (test of fixes)
D = Text fix release (minor changes that don't need testing)

The last two numbers are mostly for internal use.

Help

FAQs

Go here to look at frequently asked questions about AmiGO. Over time, this will probably be absorbed into the AmiGO manual.

Manual

AmiGO is a collection of several discrete components that interact with each other. There is a manual available for an overview of AmiGO and it's abilities. A good place to get oriented.

Articles

Application note in Bioinformatics.

Working Group Information

AmiGO Hub Working Group

Web Presence Working Group