AmiGO: Difference between revisions

Latest revision as of 14:00, 16 May 2014

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AmiGO 2

Welcome to AmiGO's wiki home on the web. This is the central public repository for AmiGO news and the locations of help, FAQs, manuals, articles, technical information, and working group information.

Versions

The current stable version is 1.7 (1.7.0.0, tagged amigo_1_7_0_0). It is available for direct download at SourceForge.net .

Information on the upcoming version is at the 1.8 site. There is also an article and link to the current beta site.

Version numbers are as follows:

A.B.C.D

A = Major release
B = Standard release (general testing)
C = Bugfix release (test of fixes)
D = Text fix release (minor changes that don't need testing)

The last two numbers are mostly for internal use.

Help

FAQs

Go here to look at frequently asked questions about AmiGO. Over time, this will probably be absorbed into the AmiGO manual.

Manual

AmiGO is a collection of several discrete components that interact with each other. There is a manual available for an overview of AmiGO and it's abilities. A good place to get oriented.

Articles

Application note in Bioinformatics.

Working Group Information

AmiGO Hub Working Group

Web Presence Working Group

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+#REDIRECT [[AmiGO_2]]
 Welcome to AmiGO's wiki home on the web. This is the central public repository for AmiGO news and the locations of help, FAQs, manuals, articles, technical information, and working group information.
-== News ==
+== Versions ==
-A new version of AmiGO is currently being tested. It can be found at the BBOP testing site.[http://toy.lbl.gov:9012/cgi-bin/amigo/go.cgi]
+The [[AmiGO_1_7 | current]] stable version is [[AmiGO_1_7 | 1.7]] (1.7.0.0, tagged amigo_1_7_0_0). It is available for direct download at [http://sourceforge.net/project/showfiles.php?group_id=36855 SourceForge.net ].
-== Help ==
+Information on the [[AmiGO_1_8 | upcoming]] version is at the [[AmiGO_1_8 | 1.8]] site. There is also an article and link to the current [[ AmiGO_Beta | beta]] site.
-There are no AmiGO specific help pages at this time, but you might want to consider the GO Helpdesk.
-=== FAQs ===
+Version numbers are as follows:
-Go [[AmiGO_FAQs | here]] to looks at frequently asked questions about AmiGO.
+ A.B.C.D
-=== Manuals ===
+ A = Major release
+ B = Standard release (general testing)
+ C = Bugfix release (test of fixes)
+ D = Text fix release (minor changes that don't need testing)
-AmiGO is broken in several discrete components that interact with each other. Below is specific help and instructions for each as well as an overview of general AmiGO functionality.
+The last two numbers are mostly for internal use.
-==== [[AmiGO_Manual:_Overview | Overview]] ====
+== Help ==
-A general overview of AmiGO and it's abilities. Go here to ger orientation for AmiGO.
-A database filtering to the use and meaning of the database filters used by AmiGO when interacting with the GO database.
+=== FAQs ===
-Things that you can download...
+Go [[AmiGO_FAQs | here]] to look at frequently asked questions about AmiGO. Over time, this will probably be absorbed into the AmiGO manual.
-==== [[AmiGO_Manual:_Term_Details | Term Details]] ====
+=== Manual ===
-Term details blurb...
-==== [[AmiGO_Manual:_Gene_Product_Details | Gene Product Details]] ====
+AmiGO is a collection of several discrete components that interact with each other.
-Gene product details blurb...
+There is a [[AmiGO_Manual:_Overview | manual]] available for an overview of AmiGO and it's abilities. A good place to get oriented.
-==== [[AmiGO_Manual:_Bar_Chart | Bar Chart Details]] ====
+== Articles ==
-Bar chart blurb...
-==== [[AmiGO_Manual:_GraphViz | GraphViz]] ====
+[http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2639003 Application note] in Bioinformatics.
-GraphViz blurb...
-==== [[AmiGO_Manual:_BLAST | BLAST]] ====
+== Working Group Information ==
-The AmiGO BLAST tool (formerly known as GOst) can be used to...
-==== [[AmiGO_Manual:_Term_Enrichment | Term Enrichment]] ====
-The AmiGO Term Enrichment tool can be used to...
-==== [[AmiGO_Manual:_Slimmer | Slimmer]] ====
-The AmiGO Slimmer tool can be used to...
-== Articles ==
-None at this time.
-== Technical articles ==
+[[AmiGO_Hub | AmiGO Hub Working Group]]
-There are no technical articles at this time, but some of the information on the database schema might be interesting.
-== Working Group Information ==
+[[Web_Presence_Working_Group | Web Presence Working Group]]
-Try the [http://gocwiki.geneontology.org/index.php/AmiGO_working_group Web Presence Working Group]
 [[Category:AmiGO]]
 [[Category:AmiGO_Manual]]
+[[Category:AmiGO_working_group]]