AmiGO

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Revision as of 16:35, 30 September 2008 by Sjcarbon (talk | contribs)
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Welcome to AmiGO's wiki home on the web. This is the central public repository for AmiGO news and the locations of help, FAQs, manuals, articles, technical information, and working group information.

Versions

The current stable version is 1.5 (1.5.4.0, tagged amigo_1_5_4_0). It is available for direct download at SourceForge.net .

Information on the upcoming version is at the 1.6 site. There is also an article and link to the current beta site.

Version numbers are as follows:

A.B.C.D
A = Major release
B = Standard release (general testing)
C = Bugfix release (test of fixes)
D = Text fix release (minor changes that don't need testing)

The last two numbers are mostly for internal use.

Help

There are no AmiGO specific help pages at this time, but you might want to consider the GO Helpdesk.

FAQs

Go here to looks at frequently asked questions about AmiGO.

Manuals

AmiGO is broken in several discrete components that interact with each other. Below is specific help and instructions for each as well as an overview of general AmiGO functionality.

Overview

A general overview of AmiGO and it's abilities. Go here to ger orientation for AmiGO.

A database filtering to the use and meaning of the database filters used by AmiGO when interacting with the GO database.

Things that you can download...

Term Details

Term details blurb...

Gene Product Details

Gene product details blurb...

Bar Chart Details

Bar chart blurb...

GraphViz

GraphViz blurb...

BLAST

The AmiGO BLAST tool (formerly known as GOst) can be used to...

Term Enrichment

The AmiGO Term Enrichment tool can be used to...

Slimmer

The AmiGO Slimmer tool can be used to...

Reference Genome Graphical View

...

Articles

None at this time.

Technical articles

There are no technical articles at this time, but some of the information on the database schema might be interesting.

Working Group Information

Try the Web Presence Working Group