AmiGO 1 6 (Archived): Difference between revisions

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* current status (2008-04-16): alpha
* beta planned for early July
* beta planned for early July


== Reference Genome Support ==
== Reference Genome Support ==


* AmiGO 1.6 exp top [http://berkeleybop.org/alpha/amigo/amigo]
* AmiGO 1.6 exp top [http://accordion.lbl.gov/cgi-bin/amigo/amigo]
** moving refG homolset summary into AmiGO framework [http://berkeleybop.org/alpha/amigo/amigo?mode=homolset_summary]
** moving refG homolset summary into AmiGO framework [DONE]
** moving refG homolset comparison graphs into AmiGO framework [http://accordion.lbl.gov/amigo/pre_render/homolset_graph_1.svg]
** moving refG homolset comparison graphs into AmiGO framework [DONE]
* display of homolsets on gene pages from AmiGO (tying)
* display of homolsets on gene pages from AmiGO (tying) [search/detail--DONE]
* better reporting of homolset information (integration of reports)
* better reporting of homolset information (integration of reports)
* organizing annotation results by qualifier
* organizing annotation results by qualifier

Revision as of 13:47, 9 July 2008

  • beta planned for early July

Reference Genome Support

  • AmiGO 1.6 exp top [1]
    • moving refG homolset summary into AmiGO framework [DONE]
    • moving refG homolset comparison graphs into AmiGO framework [DONE]
  • display of homolsets on gene pages from AmiGO (tying) [search/detail--DONE]
  • better reporting of homolset information (integration of reports)
  • organizing annotation results by qualifier

Other

  • AmiGO 1.6 bi-ax test [2]
  • Round trip with GONUTS [3]

Cross-product and inter-ontology link support

(may be punted until following release, but we will start on necessary infrastructure changes)

Examples:

(all using experimental bp_xp_mouse_anatomy xps)