AmiGO 1 6 (Archived): Difference between revisions
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= Current work = | = Current work = | ||
== Other == | |||
* most new features make use of the new DBIx::Class-based API on a CGI::Application base | |||
** improved speed | |||
** improved clarity | |||
* first use of automated web testing (tanuki) | |||
** tens of thousands page visits | |||
** caught a fair number of bad links | |||
== Deferred features == | == Deferred features == | ||
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**** [http://toy.lbl.gov:9012/cgi-bin/go_xprod/term-details.cgi?term=GO:0007507&session_id=159amigo1208881634 heart development] | **** [http://toy.lbl.gov:9012/cgi-bin/go_xprod/term-details.cgi?term=GO:0007507&session_id=159amigo1208881634 heart development] | ||
**** [http://berkeleybop.org/alpha/goxprod/amigo?mode=homolset_graph&set=1 TAZ orthoset] (notice heart in top right corner) | **** [http://berkeleybop.org/alpha/goxprod/amigo?mode=homolset_graph&set=1 TAZ orthoset] (notice heart in top right corner) | ||
== Future work == | == Future work == | ||
Revision as of 20:23, 17 October 2008
Status
Currently beta
New Features
Community annotation
- Round trip through GONuts.
- Real-time participation
Reference Genome Support
- Includes full support for Reference Genome displays
- Links in from AmiGO
- gene product search page
- gene product details page
- Details
- details of evidence type
- sortable
- Vizualizations
- Cachable
- Interative SVG
- information from the details page
- Static PNG
- Summary
- Cachable
- evidence type groups
- Links in from AmiGO
Current work
Other
- most new features make use of the new DBIx::Class-based API on a CGI::Application base
- improved speed
- improved clarity
- first use of automated web testing (tanuki)
- tens of thousands page visits
- caught a fair number of bad links
Deferred features
- Organizing annotation results by qualifier
- Term request client
- Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes)
- xprods in 1.5
- xprods in 1.6
- Examples (all using experimental bp_xp_mouse_anatomy xps):
- heart
- heart development
- TAZ orthoset (notice heart in top right corner)
- Examples (all using experimental bp_xp_mouse_anatomy xps):
Future work
- Qualifiers in display
- Term request client to SF
- Lucene
- complex search
- boolean
- distance
- weight
- graph information as well?
- complex search
- AmiGO 1.6 bi-ax test [1] (defunct?)