AmiGO 1 6 (Archived): Difference between revisions
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* Organizing annotation results by qualifier | * Organizing annotation results by qualifier | ||
* Term request client | * Term request client for SF | ||
* Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes) | * Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes) | ||
** [http://toy.lbl.gov:9012/cgi-bin/go_xprod/go.cgi xprods in 1.5] | ** [http://toy.lbl.gov:9012/cgi-bin/go_xprod/go.cgi xprods in 1.5] | ||
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== Future work in progress (visible in live beta) == | == Future work in progress (visible in live beta) == | ||
* OpenSearch | * OpenSearch | ||
** term completion and suggestions in web browser | ** term completion and suggestions in web browser |
Revision as of 20:29, 17 October 2008
Status
Currently beta
New Features
Community annotation
- Round trip through GONuts.
- Real-time participation
Reference Genome Support
- Includes full support for Reference Genome displays
- Links in from AmiGO
- gene product search page
- gene product details page
- Details
- details of evidence type
- sortable
- Vizualizations
- Cachable
- Interative SVG
- information from the details page
- Static PNG
- Summary
- Cachable
- evidence type groups
- Links in from AmiGO
Current work
Other
- most new features make use of the new DBIx::Class-based API on a CGI::Application base
- improved speed
- improved clarity
- first use of automated web testing (tanuki)
- tens of thousands page visits
- caught a fair number of bad links
Deferred features
- Organizing annotation results by qualifier
- Term request client for SF
- Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes)
- xprods in 1.5
- xprods in 1.6
- Examples (all using experimental bp_xp_mouse_anatomy xps):
- heart
- heart development
- TAZ orthoset (notice heart in top right corner)
- Examples (all using experimental bp_xp_mouse_anatomy xps):
Future work in progress (visible in live beta)
- OpenSearch
- term completion and suggestions in web browser
- direct access or search
- Lucene
- complex search
- boolean
- distance
- weight
- graph information as well?
- complex search
- advanced graph visualizations
- bi-ax test [1] (defunct?)