AmiGO 1 6 (Archived): Difference between revisions

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* Organizing annotation results by qualifier
* Organizing annotation results by qualifier
* Term request client
* Term request client for SF
* Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes)
* Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes)
** [http://toy.lbl.gov:9012/cgi-bin/go_xprod/go.cgi xprods in 1.5]
** [http://toy.lbl.gov:9012/cgi-bin/go_xprod/go.cgi xprods in 1.5]
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== Future work in progress (visible in live beta) ==
== Future work in progress (visible in live beta) ==


* Term request client to SF
* OpenSearch
* OpenSearch
** term completion and suggestions in web browser
** term completion and suggestions in web browser

Revision as of 20:29, 17 October 2008

Status

Currently beta

New Features

Community annotation

  • Round trip through GONuts.
  • Real-time participation

Reference Genome Support

  • Includes full support for Reference Genome displays
    • Links in from AmiGO
      • gene product search page
      • gene product details page
    • Details
      • details of evidence type
      • sortable
    • Vizualizations
      • Cachable
      • Interative SVG
        • information from the details page
      • Static PNG
    • Summary
      • Cachable
      • evidence type groups

Current work

Other

  • most new features make use of the new DBIx::Class-based API on a CGI::Application base
    • improved speed
    • improved clarity
  • first use of automated web testing (tanuki)
    • tens of thousands page visits
    • caught a fair number of bad links

Deferred features

  • Organizing annotation results by qualifier
  • Term request client for SF
  • Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes)

Future work in progress (visible in live beta)

  • OpenSearch
    • term completion and suggestions in web browser
    • direct access or search
  • Lucene
    • complex search
      • boolean
      • distance
      • weight
    • graph information as well?
  • advanced graph visualizations
  • bi-ax test [1] (defunct?)