AmiGO 1 6 (Archived): Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
| Line 14: | Line 14: | ||
* Includes full support for Reference Genome displays | * Includes full support for Reference Genome displays | ||
** Links in from AmiGO | ** Links in from AmiGO | ||
*** gene product search page | *** gene product search page | ||
*** gene product details page | *** gene product details page [http://ash.lbl.gov/cgi-bin/amigo/gp-details.cgi?gp=UniProtKB:Q01860] | ||
** Details | ** Details [http://ash.lbl.gov/cgi-bin/amigo/amigo?mode=homolset_annotation&set=307&order=default] | ||
*** details of evidence type | *** details of evidence type | ||
*** sortable | *** sortable | ||
** Vizualizations | ** Vizualizations | ||
*** Cachable | *** Cachable | ||
*** Interative SVG | *** Interative SVG [http://ash.lbl.gov/cgi-bin/amigo/amigo?mode=homolset_graph&set=307&format=svg] | ||
**** information from the details page | **** information from the details page | ||
*** Static PNG | *** Static PNG [http://ash.lbl.gov/cgi-bin/amigo/amigo?mode=homolset_graph&set=307&format=png] | ||
** Summary | ** Summary [http://ash.lbl.gov/cgi-bin/amigo/amigo?mode=homolset_summary] | ||
*** Cachable | *** Cachable | ||
*** evidence type groups | *** evidence type groups | ||
== Other (may be changed for final) == | |||
* software page | |||
* site optional links to beta features | |||
= Current work = | = Current work = | ||
Revision as of 20:35, 17 October 2008
Status
Currently beta
New Features
Community annotation
- Round trip through GONuts.
- Real-time participation
Reference Genome Support
- Includes full support for Reference Genome displays
Other (may be changed for final)
- software page
- site optional links to beta features
Current work
Other
- most new features make use of the new DBIx::Class-based API on a CGI::Application base
- improved speed
- improved clarity
- first use of automated web testing (tanuki)
- tens of thousands page visits
- caught a fair number of bad links
Deferred features
- Organizing annotation results by qualifier
- Term request client for SF
- Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes)
- xprods in 1.5
- xprods in 1.6
- Examples (all using experimental bp_xp_mouse_anatomy xps):
- heart
- heart development
- TAZ orthoset (notice heart in top right corner)
- Examples (all using experimental bp_xp_mouse_anatomy xps):
Future work in progress (visible in live beta)
- OpenSearch
- term completion and suggestions in web browser
- direct access or search
- Lucene
- complex search
- boolean
- distance
- weight
- graph information as well?
- complex search
- advanced graph visualizations
- bi-ax test [6] (defunct?)