AmiGO 1 6 (Archived): Difference between revisions

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= Status =
= Status =


Currently [http://ash.lbl.gov/cgi-bin/amigo/go beta]
Currently [http://ash.lbl.gov/cgi-bin/amigo/go beta].


See [[AmiGO 1 7]] for information about the release after 1.6.
See [[AmiGO 1 7]] for information about the release after 1.6.
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== Community annotation ==
== Community annotation ==


* Round trip through GONUTS: [http://ash.lbl.gov/cgi-bin/amigo/term-details.cgi?term=GO:0035194 test page]
Term Information now contains a category for "Community". This reflects the current activity for the term on the GONUTS wiki. In addition, the GONUTS wiki now contains links back into AmiGO, so a user can easily move back and forth between the two. This allows real-time participation for the community.
** AmiGO checks whether the GONUTS wiki has any information about this term, and shows a link to the appropriate GONUTS page if so.  
 
** Real-time participation
Example: Round trip through GONUTS: [http://ash.lbl.gov/cgi-bin/amigo/term-details.cgi?term=GO:0035194 test page]
 
Detail: AmiGO checks whether the GONuts wiki has any information about this term using the GONUTS API.


== Reference Genome Support ==
== Reference Genome Support ==
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*** evidence type groups
*** evidence type groups


== Other (may be changed for final) ==
== Other ==
 
There has been the addition of an [http://ash.lbl.gov/cgi-bin/amigo/amigo Other Tools] button to the toolbar. This links to an overview page of the software available in AmiGO. It is sparsely populated at the moment, but as more tools are added to AmiGO, this will become a major hub.


* software page [http://ash.lbl.gov/cgi-bin/amigo/amigo]
A link in the footer has also been added that (indirectly) links to an experimental version of AmiGO in order to get early feedback on new features.
* site optional links to beta features





Revision as of 19:27, 26 March 2009

Status

Currently beta.

See AmiGO 1 7 for information about the release after 1.6.

New Features

Community annotation

Term Information now contains a category for "Community". This reflects the current activity for the term on the GONUTS wiki. In addition, the GONUTS wiki now contains links back into AmiGO, so a user can easily move back and forth between the two. This allows real-time participation for the community.

Example: Round trip through GONUTS: test page

Detail: AmiGO checks whether the GONuts wiki has any information about this term using the GONUTS API.

Reference Genome Support

  • Includes full support for Reference Genome displays
    • Links in from AmiGO
      • gene product search page [1] (search for "pou5f")
      • gene product details page [2]
    • Details [3]
      • details of evidence type
      • sortable
    • Vizualizations
      • Cachable
      • Interative SVG [4]
        • information from the details page
      • Static PNG [5]
    • Summary [6]
      • Cachable
      • evidence type groups

Other

There has been the addition of an Other Tools button to the toolbar. This links to an overview page of the software available in AmiGO. It is sparsely populated at the moment, but as more tools are added to AmiGO, this will become a major hub.

A link in the footer has also been added that (indirectly) links to an experimental version of AmiGO in order to get early feedback on new features.