AmiGO 1 6 (Archived): Difference between revisions
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=== Details === | === Details === | ||
Each homolog set now has its own details page in AmiGO (for [http://ash.lbl.gov/cgi-bin/amigo/amigo?mode=homolset_annotation&set=307&order=default example]). These details pages include information about | Each homolog set now has its own details page in AmiGO (for [http://ash.lbl.gov/cgi-bin/amigo/amigo?mode=homolset_annotation&set=307&order=default example]). These details pages include information about | ||
the reference genome annotations to GO terms for all of the reference genome species, as well as the best type of evidence used. | |||
The GO terms are sortable by several criteria. | |||
Technical detail: these pages are cacheable on the server side. | Technical detail: these pages are cacheable on the server side. | ||
=== | === Visualizations === | ||
Linked from the details pages are two visual graph-based versions of the information They come in [http://ash.lbl.gov/cgi-bin/amigo/amigo?mode=homolset_graph&set=307&format=svg interactive SVG] and [http://ash.lbl.gov/cgi-bin/amigo/amigo?mode=homolset_graph&set=307&format=png static PNG] formats. | |||
Technical detail: these pages are cacheable on the server side. | Technical detail: these pages are cacheable on the server side. | ||
Revision as of 20:31, 26 March 2009
Status
Currently beta.
See AmiGO 1 7 for information about the release after 1.6.
New Features
Community annotation
Term Information now contains a category for "Community". This reflects the current activity for the term on the GONUTS wiki. In addition, the GONUTS wiki now contains links back into AmiGO, so a user can easily move back and forth between the two. This allows real-time participation for the community.
Example: Round trip through GONUTS: test page
Detail: AmiGO checks whether the GONuts wiki has any information about this term using the GONUTS API.
Reference Genome Support
Several things have been added to AmiGO to support the addition of the Reference Genome information to the GO database.
Details
Each homolog set now has its own details page in AmiGO (for example). These details pages include information about the reference genome annotations to GO terms for all of the reference genome species, as well as the best type of evidence used.
The GO terms are sortable by several criteria.
Technical detail: these pages are cacheable on the server side.
Visualizations
Linked from the details pages are two visual graph-based versions of the information They come in interactive SVG and static PNG formats.
Technical detail: these pages are cacheable on the server side.
Summary
There is also a summary page that contains a distilled version of the information in the details pages for all homolog sets.
Technical detail: this page is cached on the server side.
Links
In order for users to access the new information, already existed pages have had links to new homolset information added:
Other
There has been the addition of an Other Tools button to the toolbar. This links to an overview page of the software available in AmiGO. It is sparsely populated at the moment, but as more tools are added to AmiGO, this will become a major hub.
A link in the footer has also been added that (indirectly) links to an experimental version of AmiGO in order to get early feedback on new features.