AmiGO 1 6 (Archived)

Status

Currently beta

New Features

Community annotation

• Round trip through GONuts.
• Real-time participation

Reference Genome Support

• Includes full support for Reference Genome displays
  • Links in from AmiGO
    • gene product search page
    • gene product details page
  • Details
    • details of evidence type
    • sortable
  • Vizualizations
    • Cachable
    • Interative SVG
      • information from the details page
    • Static PNG
  • Summary
    • Cachable
    • evidence type groups

Current work

Deferred features

• Organizing annotation results by qualifier
• Term request client
• Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes)
  • xprods in 1.5
  • xprods in 1.6
    • Examples (all using experimental bp_xp_mouse_anatomy xps):
      • heart
      • heart development
      • TAZ orthoset (notice heart in top right corner)

Other

• most new features make use of the new DBIx::Class-based API
• first use of automated web testing (tanuki)
  • tens of thousands page visits
  • caught a fair number of bad links

Future work

• Qualifiers in display
• Term request client to SF
• Lucene
  • complex search
    • boolean
    • distance
    • weight
  • graph information as well?
• AmiGO 1.6 bi-ax test [1] (defunct?)