AmiGO 1 6 (Archived)
Status
Currently beta
New Features
Community annotation
- Round trip through GONuts [1]
- Real-time participation
Reference Genome Support
- Includes full support for Reference Genome displays
Other (may be changed for final)
- software page [8]
- site optional links to beta features
Current work
Other
- most new features make use of the new DBIx::Class-based API on a CGI::Application base
- improved speed
- improved clarity
- first use of automated web testing
- tens of thousands page visits
- caught a fair number of bad links and pages
- small changes in future AmiGO design to support better automated testing
Deferred features
- Organizing annotation results by qualifier
- Term request client for SF
- Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes)
- xprods in 1.5
- xprods in 1.6
- Examples (all using experimental bp_xp_mouse_anatomy xps):
- heart
- heart development
- TAZ orthoset (notice heart in top right corner)
- Examples (all using experimental bp_xp_mouse_anatomy xps):
Future work in progress (visible in live beta)
- Coannotation
- OpenSearch
- term completion and suggestions in web browser
- direct access or search
- Lucene
- speed
- complex search
- boolean
- distance
- weight
- graph information as well?
- advanced graph visualizations
- bi-ax test [9] (defunct?)