AmiGO 1 6 (Archived)

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Revision as of 08:59, 22 October 2008 by Sjcarbon (talk | contribs)
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Status

Currently beta

New Features

Community annotation

  • Round trip through GONuts [1]
    • Real-time participation

Reference Genome Support

  • Includes full support for Reference Genome displays
    • Links in from AmiGO
      • gene product search page [2] (search for "pou5f")
      • gene product details page [3]
    • Details [4]
      • details of evidence type
      • sortable
    • Vizualizations
      • Cachable
      • Interative SVG [5]
        • information from the details page
      • Static PNG [6]
    • Summary [7]
      • Cachable
      • evidence type groups

Other (may be changed for final)

  • software page [8]
  • site optional links to beta features

Current work

Other

  • most new features make use of the new DBIx::Class-based API on a CGI::Application base
    • improved speed
    • improved clarity
  • first use of automated web testing
    • tens of thousands page visits
    • caught a fair number of bad links and pages
    • small changes in future AmiGO design to support better automated testing

Deferred features

  • Organizing annotation results by qualifier
  • Term request client for SF
  • Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes)

Future work in progress (visible in live beta)

  • Coannotation
  • OpenSearch
    • term completion and suggestions in web browser
    • direct access or search
  • Lucene
    • speed
    • complex search
      • boolean
      • distance
      • weight
    • graph information as well?
  • advanced graph visualizations
  • bi-ax test [9] (defunct?)