AmiGO 1 6 (Archived)

From GO Wiki
Revision as of 20:07, 26 March 2009 by Sjcarbon (talk | contribs)
Jump to navigation Jump to search

Status

Currently beta.

See AmiGO 1 7 for information about the release after 1.6.

New Features

Community annotation

Term Information now contains a category for "Community". This reflects the current activity for the term on the GONUTS wiki. In addition, the GONUTS wiki now contains links back into AmiGO, so a user can easily move back and forth between the two. This allows real-time participation for the community.

Example: Round trip through GONUTS: test page

Detail: AmiGO checks whether the GONuts wiki has any information about this term using the GONUTS API.

Reference Genome Support

Several things have been added to AmiGO to support the addition of the Reference Genome information to the GO database.

Details

Each homolog set now has its own details page in AmiGO (for example). These details pages include information about

as well as the details of that evidence type.

and are sortable by several criteria.

Technical detail: these pages are cacheable on the server side.

Vizsualizations

      • Interative SVG [1]
        • information from the details page
      • Static PNG [2]

Technical detail: these pages are cacheable on the server side.

Summary

There is also a summary page that contains a distilled version of the information in the details pages for all homolog sets.

Technical detail: this page is cached on the server side.

Links

In order for users to access the new information, already existed pages have had links to new homolset information added:

  • gene product search pages [3] (search for "pou5f")
  • gene product details pages [4]

Other

There has been the addition of an Other Tools button to the toolbar. This links to an overview page of the software available in AmiGO. It is sparsely populated at the moment, but as more tools are added to AmiGO, this will become a major hub.

A link in the footer has also been added that (indirectly) links to an experimental version of AmiGO in order to get early feedback on new features.