AmiGO 1 7 (Archived): Difference between revisions
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Currently [http://ash.lbl.gov/cgi-bin/amigo/go alpha]. | Currently [http://ash.lbl.gov/cgi-bin/amigo/go alpha]. | ||
= New Features = | |||
TBA | |||
= Current work = | = Current work = | ||
Revision as of 19:41, 26 March 2009
Status
Currently alpha.
New Features
TBA
Current work
Other
- most new features make use of the new DBIx::Class-based API on a CGI::Application base
- improved speed
- improved clarity
- first use of automated web testing
- tens of thousands page visits
- caught a fair number of bad links and pages
- small changes in future AmiGO design to support better automated testing
Deferred features
- Organizing annotation results by qualifier
- Term request client for SF
- Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes)
- xprods in 1.5
- xprods in 1.6
- Examples (all using experimental bp_xp_mouse_anatomy xps):
- heart
- heart development
- TAZ orthoset (notice heart in top right corner)
- Examples (all using experimental bp_xp_mouse_anatomy xps):
Future work in progress (visible in live beta)
- Coannotation
- OpenSearch
- term completion and suggestions in web browser
- direct access or search
- Lucene
- speed
- complex search
- boolean
- distance
- weight
- graph information as well?
- advanced graph visualizations
- bi-ax test [1] (defunct?)
Wishlists
Client-side
- Expand the scope of community annotation (depending on user feedback).
Server-side
- Switch caching over from page render caching to data caching (currently evaluating sqlite3)
- Change all graph displays to be backed by standard backend (see visualize experimental AmiGO module)