AmiGO 1 7 (Archived): Difference between revisions
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= Current work = | = Current work = | ||
== Other == | == Other == | ||
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* Organizing annotation results by qualifier | * Organizing annotation results by qualifier | ||
* Term request client for SF | * Term request client for SF (AKA ART) | ||
* Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes) | * Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes) | ||
** [http://toy.lbl.gov:9012/cgi-bin/go_xprod/go.cgi xprods in 1.5] | ** [http://toy.lbl.gov:9012/cgi-bin/go_xprod/go.cgi xprods in 1.5] | ||
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== Future work in progress (visible in live beta) == | == Future work in progress (visible in live beta) == | ||
* Coannotation | * Coannotation (possible [http://ash.lbl.gov/cgi-bin/amigo/amigo_exp?mode=gp_with_2_terms coannotation] interface) | ||
* OpenSearch | * OpenSearch | ||
** term completion and suggestions in web browser | ** term completion and suggestions in web browser | ||
Revision as of 20:32, 27 March 2009
Status
Currently alpha.
New Features
TBD
Current work
Other
- most new features make use of the new DBIx::Class-based API on a CGI::Application base
- improved speed
- improved clarity
- first use of automated web testing
- tens of thousands page visits
- caught a fair number of bad links and pages
- small changes in future AmiGO design to support better automated testing
Deferred features
- Organizing annotation results by qualifier
- Term request client for SF (AKA ART)
- Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes)
- xprods in 1.5
- xprods in 1.6
- Examples (all using experimental bp_xp_mouse_anatomy xps):
- heart
- heart development
- TAZ orthoset (notice heart in top right corner)
- Examples (all using experimental bp_xp_mouse_anatomy xps):
Future work in progress (visible in live beta)
- Coannotation (possible coannotation interface)
- OpenSearch
- term completion and suggestions in web browser
- direct access or search
- Lucene
- speed
- complex search
- boolean
- distance
- weight
- graph information as well?
- advanced graph visualizations
- bi-ax test [1] (defunct?)
Wishlists
Client-side
- Expand the scope of community annotation (depending on user feedback).
Server-side
- Switch caching over from page render caching to data caching (currently evaluating sqlite3)
- Change all graph displays to be backed by standard backend (see visualize experimental AmiGO module)