AmiGO 1 7 (Archived): Difference between revisions
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* Coannotation (possible [http://ash.lbl.gov/cgi-bin/amigo/amigo_exp?mode=gp_with_2_terms coannotation] interface) | * Coannotation (possible [http://ash.lbl.gov/cgi-bin/amigo/amigo_exp?mode=gp_with_2_terms coannotation] interface) | ||
* easy graph generation [http://ash.lbl.gov/cgi-bin/amigo/amigo_exp?mode=visualize] | |||
* OpenSearch | * OpenSearch | ||
** term completion and suggestions in web browser | ** term completion and suggestions in web browser | ||
** direct access or search | ** direct access or search | ||
* Lucene | * Lucene ([http://ash.lbl.gov/cgi-bin/amigo/amigo_exp?mode=lexical_search concept page]) | ||
** speed | ** speed | ||
** complex search | ** complex search | ||
| Line 34: | Line 35: | ||
*** weight | *** weight | ||
** graph information as well? | ** graph information as well? | ||
* advanced graph visualizations | * advanced graph visualizations [http://ash.lbl.gov/cgi-bin/amigo/amigo_exp?mode=layers_graph] [http://ash.lbl.gov/cgi-bin/amigo/amigo_exp?mode=layers2_graph] | ||
* bi-ax test [http://toy.lbl.gov:9012/cgi-bin/amigo2/bxdemo] (defunct?) | * bi-ax test [http://toy.lbl.gov:9012/cgi-bin/amigo2/bxdemo] (defunct?) | ||
Revision as of 20:41, 27 March 2009
Status
Currently alpha.
New Features
TBD
Current work
Deferred features
- Organizing annotation results by qualifier
- Term request client for SF (AKA ART)
- Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes)
- xprods in 1.5
- xprods in 1.6
- Examples (all using experimental bp_xp_mouse_anatomy xps):
- heart
- heart development
- TAZ orthoset (notice heart in top right corner)
- Examples (all using experimental bp_xp_mouse_anatomy xps):
Future work in progress (visible in live beta)
- Coannotation (possible coannotation interface)
- easy graph generation [1]
- OpenSearch
- term completion and suggestions in web browser
- direct access or search
- Lucene (concept page)
- speed
- complex search
- boolean
- distance
- weight
- graph information as well?
- advanced graph visualizations [2] [3]
- bi-ax test [4] (defunct?)
TBD
Client-side
- Expand the scope of community annotation (depending on user feedback).
Server-side
- Switch caching over from page render caching to data caching (currently evaluating sqlite3)
- Change all graph displays to be backed by standard backend (see visualize experimental AmiGO module)