AmiGO 1 7 (Archived): Difference between revisions
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= Done Features = | = Done Features = | ||
* new/easy graphviz-style graph generation [http:// | * new/easy graphviz-style graph generation [http://amigo.berkeleybop.org/cgi-bin/amigo/amigo_exp?mode=visualize] | ||
** RESTful API (as yet unpublished) | ** RESTful API (as yet unpublished) | ||
** basic and advanced inputs ([[AmiGO_Manual:_Visualize]]) | ** basic and advanced inputs ([[AmiGO_Manual:_Visualize]]) | ||
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== Future work in progress (visible in live beta) == | == Future work in progress (visible in live beta) == | ||
* Coannotation (possible [http:// | * Coannotation (possible [http://amigo.berkeleybop.org/cgi-bin/amigo/amigo_exp?mode=gp_with_2_terms coannotation] interface) | ||
* OpenSearch | * OpenSearch | ||
** term completion and suggestions in web browser | ** term completion and suggestions in web browser | ||
** direct access or search | ** direct access or search | ||
* Lucene ([http:// | * Lucene ([http://amigo.berkeleybop.org/cgi-bin/amigo/amigo_exp?mode=lexical_search concept page]) | ||
** speed | ** speed | ||
** complex search | ** complex search | ||
| Line 47: | Line 47: | ||
*** weight | *** weight | ||
** graph information as well? | ** graph information as well? | ||
* advanced graph visualizations [http:// | * advanced graph visualizations [http://amigo.berkeleybop.org/cgi-bin/amigo/amigo_exp?mode=layers_graph] [http://ash.lbl.gov/cgi-bin/amigo/amigo_exp?mode=layers2_graph] | ||
* bi-ax test [http://toy.lbl.gov:9012/cgi-bin/amigo2/bxdemo] (defunct?) | * bi-ax test [http://toy.lbl.gov:9012/cgi-bin/amigo2/bxdemo] (defunct?) | ||
* Workspaces (generalization of session) | * Workspaces (generalization of session) | ||
Revision as of 14:04, 23 April 2009
Status
Currently experimental.
Planned Features
TBD
Done Features
- new/easy graphviz-style graph generation [1]
- RESTful API (as yet unpublished)
- basic and advanced inputs (AmiGO_Manual:_Visualize)
- all graph displays backed by same backend
- interactive and static everywhere
- term enrichment
- browser
- homolset
- visualize client
Current work
Deferred features
- Organizing annotation results by qualifier
- Term request client for SF (AKA ART)
- could this be better done in wiki?
- Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes)
- xprods in 1.5
- xprods in 1.6
- Examples (all using experimental bp_xp_mouse_anatomy xps):
- heart
- heart development
- TAZ orthoset (notice heart in top right corner)
- Examples (all using experimental bp_xp_mouse_anatomy xps):
Future work in progress (visible in live beta)
- Coannotation (possible coannotation interface)
- OpenSearch
- term completion and suggestions in web browser
- direct access or search
- Lucene (concept page)
- speed
- complex search
- boolean
- distance
- weight
- graph information as well?
- advanced graph visualizations [2] [3]
- bi-ax test [4] (defunct?)
- Workspaces (generalization of session)
TBD
- Expand the scope of community annotation (depending on user feedback).
- Switch caching over from page render caching to data caching (currently evaluating sqlite3)
- RSS update on terms and gps (could be tied to GONUTs for timeliness?)
- add Google analytics throughout AmiGO and associated sites.
- looking at other ways to supply search results (perl clucene (apache) vs. lucene (tomcat) vs. solr (tomcat or jetty) vs. perl/xapian (apache) vs. ruby/ferret (apache))
- look at ways of solving "*ase" problem(if it is) (e.g. reverse indexing and merge results)