AmiGO 1 7 (Archived): Difference between revisions

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= Status =
= Status =


Currently [http://amigo.berkeleybop.org/cgi-bin/amigo/go experimental].
See [[AmiGO 1 8]] for information about the current production release.
 
See [[AmiGO 1 8]] for information about the release after 1.7.


= New Features =
= New Features =
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== Support for IEAs ==
== Support for IEAs ==


All features upport the database generated with the IEA subset.
All features support the database generated with the IEA subset.


== New Graphics Backend ==
== New Graphics Backend ==


All of the graphics in AmiGO are now handled by and common, and more flexible, backend. Now only does this mean more consistency in the output from different places, but gives the user the ability to make [http://amigo.berkeleybop.org/cgi-bin/amigo/amigo?mode=visualize custom graphs].
All of the graphics in AmiGO are now handled by a common, and more flexible, backend. Not only does this mean more consistency in the output on different pages, but gives the user the ability to make arbitrary [http://amigo.geneontology.org/cgi-bin/amigo/amigo?mode=visualize custom graphs].


=== Details ===
=== Details ===
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** homolset
** homolset
** visualize client
** visualize client
* RESTful API (unstable)
* RESTful API (unpublished)


== Google Analytics ==
== Google Analytics ==
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The Google analytics code is now throughout AmiGO, AmiGO Labs, and GOOSE. This tracking is enabled with an optional file.
The Google analytics code is now throughout AmiGO, AmiGO Labs, and GOOSE. This tracking is enabled with an optional file.


== In Labs (experimental) ==
== Miscellaneous ==
 
* Bugs fixed, text repaired (see bug tracker)
* Little improvements (see request tracker)
* GOOSE has a new home
 
= Labs (experimental) =


* Basic lucene index generation
* Basic lucene index generation
* OpenSearch [[AmiGO_Manual:_OpenSearch]]
* OpenSearch [[AmiGO_Manual:_OpenSearch]]
** gene product and term completion suggestions in web browser
** available on Firefox and IE Add-Ons sites
** direct access jump or search
** dashboard widget available for Mac OS X
** available on Firefox Add-Ons site
* JavaScript API core
* OpenLayers-based graph browser
* OpenLayers-based graph browser
* Lucene-based live search
* Live search
* Workspace environment core
* Workspace environment core
* Arbitrarily attachable autocomplete
* Arbitrarily attachable autocomplete
== Miscellaneous ==
* Bugs fixed, text repaired (see bug tracker)
* Little improvements (see request tracker)
* GOOSE has a new home


[[Category:Software]]
[[Category:Software]]
[[Category:AmiGO]]
[[Category:AmiGO]]

Latest revision as of 09:51, 13 December 2018

Status

See AmiGO 1 8 for information about the current production release.

New Features

Support for IEAs

All features support the database generated with the IEA subset.

New Graphics Backend

All of the graphics in AmiGO are now handled by a common, and more flexible, backend. Not only does this mean more consistency in the output on different pages, but gives the user the ability to make arbitrary custom graphs.

Details

  • all graph displays backed by same service
  • basic and advanced inputs for user client (AmiGO_Manual:_Visualize)
  • interactive and static everywhere
    • term enrichment
    • browser
    • homolset
    • visualize client
  • RESTful API (unpublished)

Google Analytics

The Google analytics code is now throughout AmiGO, AmiGO Labs, and GOOSE. This tracking is enabled with an optional file.

Miscellaneous

  • Bugs fixed, text repaired (see bug tracker)
  • Little improvements (see request tracker)
  • GOOSE has a new home

Labs (experimental)

  • Basic lucene index generation
  • OpenSearch AmiGO_Manual:_OpenSearch
    • available on Firefox and IE Add-Ons sites
    • dashboard widget available for Mac OS X
  • JavaScript API core
  • OpenLayers-based graph browser
  • Live search
  • Workspace environment core
  • Arbitrarily attachable autocomplete