AmiGO 1 7 (Archived)

Status

Currently alpha.

New Features

TBD

Current work

Deferred features

• Organizing annotation results by qualifier
• Term request client for SF (AKA ART)
• Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes)
  • xprods in 1.5
  • xprods in 1.6
    • Examples (all using experimental bp_xp_mouse_anatomy xps):
      • heart
      • heart development
      • TAZ orthoset (notice heart in top right corner)

Future work in progress (visible in live beta)

• Coannotation (possible coannotation interface)
• easy graph generation [1]
• OpenSearch
  • term completion and suggestions in web browser
  • direct access or search
• Lucene (concept page)
  • speed
  • complex search
    • boolean
    • distance
    • weight
  • graph information as well?
• advanced graph visualizations [2] [3]
• bi-ax test [4] (defunct?)

TBD

Client-side

• Expand the scope of community annotation (depending on user feedback).

Server-side

• Switch caching over from page render caching to data caching (currently evaluating sqlite3)
• Change all graph displays to be backed by standard backend (see visualize experimental AmiGO module)