AmiGO 1 8: Difference between revisions
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In discussion--currently this is a close descendant of 1.7. | In discussion--currently this is a close descendant of 1.7. | ||
Currently [http://amigo.berkeleybop.org/cgi-bin/amigo/go experimental]. | Currently [http://amigo.berkeleybop.org/cgi-bin/amigo/go experimental]. | ||
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* Switch over to Lucene for searching | * Switch over to Lucene for searching | ||
** Addition of ubiquitous completion in boxes | ** Addition of ubiquitous completion in boxes | ||
* Migrate core pages over to the new framework | |||
** Front page with completion ([http://amigo.berkeleybop.org/cgi-bin/amigo/amigo_exp?mode=front_page concept]) | |||
* Matrix tool ([http://amigo.berkeleybop.org/cgi-bin/amigo/amigo_exp?mode=nmatrix nmatrix]) | |||
== Planned features == | |||
* Redo of term info/tree view in all locations | * Redo of term info/tree view in all locations | ||
** Neighborhood-based view | ** Neighborhood-based view | ||
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** phylogenic tree | ** phylogenic tree | ||
* Migrate peripheral pages to new framework | * Migrate peripheral pages to new framework | ||
== Deferred features == | == Deferred features == | ||
Revision as of 19:27, 23 November 2009
Status
In discussion--currently this is a close descendant of 1.7.
Currently experimental.
Planned Features
- TBD...
Done Features
Current work
Future work in progress (visible in live experimental)
- Switch over to Lucene for searching
- Addition of ubiquitous completion in boxes
- Migrate core pages over to the new framework
- Front page with completion (concept)
- Matrix tool (nmatrix)
Planned features
- Redo of term info/tree view in all locations
- Neighborhood-based view
- Relation filtering
- Start with term enrichment and work out
- Revisit reference genome views and pages
- phylogenic tree
- Migrate peripheral pages to new framework
Deferred features
- Organizing annotation results by qualifier
- Term request client for SF (AKA ART)
- could this be better done in wiki?
- Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes)
- xprods in 1.5
- xprods in 1.6
- Examples (all using experimental bp_xp_mouse_anatomy xps):
- heart
- heart development
- TAZ orthoset (notice heart in top right corner)
- Examples (all using experimental bp_xp_mouse_anatomy xps):
TBD
- Coannotation (possible coannotation interface)
- advanced graph visualizations [1] [2]
- early plugin framework done
- heatmap and random plugin examples
- Workspaces, generalization of sessions (concept)
- Expand the scope of community annotation (depending on user feedback).
- Switch TE caching over from page render caching to data caching (currently evaluating sqlite3)
- RSS update on terms and gps (could be tied to GONUTs for timeliness?)
- looking at other ways to supply search results (perl clucene (apache) vs. lucene (tomcat) vs. solr (tomcat or jetty) vs. perl/xapian (apache) vs. ruby/ferret (apache))
- look at ways of solving "*ase" problem (if it is) (e.g. reverse indexing and merge results)