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| * Slimmer bug [https://sourceforge.net/tracker/index.php?func=detail&aid=2996853&group_id=36855&atid=908269] | | * Slimmer bug [https://sourceforge.net/tracker/index.php?func=detail&aid=2996853&group_id=36855&atid=908269] |
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| = Deferred (alpha) features =
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| * <strike>Switch TE caching over from page render caching to data caching (currently evaluating sqlite3)</strike> [likely bumped in favor of new tools]
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| * Term request client for SF (AKA ART) ([http://amigo.berkeleybop.org/cgi-bin/amigo/xp_term_request XP term request])
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| ** Could this be better done in wiki?
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| * Coannotation (possible [http://amigo.berkeleybop.org/cgi-bin/amigo/amigo_exp?mode=gp_with_2_terms coannotation] interface)
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| * Advanced graph visualizations [http://amigo.berkeleybop.org/cgi-bin/amigo/amigo_exp?mode=layers_graph] [http://amigo.berkeleybop.org/cgi-bin/amigo/amigo_exp?mode=layers2_graph]
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| ** Early plugin framework done
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| ** Heatmap and random plugin examples
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| * Workspaces, generalization of sessions ([http://amigo.berkeleybop.org/cgi-bin/amigo/amigo_exp?mode=workspace_client concept])
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| * Addition of ubiquitous completion in boxes
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| ** Front page with completion ([http://amigo.berkeleybop.org/cgi-bin/amigo/amigo_exp?mode=front_page concept])
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| ** [http://toy.lbl.gov:9012/cgi-bin/go_xprod/go.cgi xprods in 1.5]
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| ** [http://berkeleybop.org/alpha/goxprod/go.cgi xprods in 1.6]
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| ***Examples (all using experimental bp_xp_mouse_anatomy xps):
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| **** [http://toy.lbl.gov:9012/cgi-bin/go_xprod/term-assoc.cgi?term=MA:0000072 heart]
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| **** [http://toy.lbl.gov:9012/cgi-bin/go_xprod/term-details.cgi?term=GO:0007507&session_id=159amigo1208881634 heart development]
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| **** [http://berkeleybop.org/alpha/goxprod/amigo?mode=homolset_graph&set=1 TAZ orthoset] (notice heart in top right corner)
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|
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| = Plans and TBD =
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|
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| * Migrate peripheral pages to new framework (ongoing)
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| * Migrate core pages over to the new framework (ongoing)
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| * Relations for TE
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| * Slimmer rebuild
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| * Lucene
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| ** Replace traditional search with lucene-backed
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| ** Everything to consume Solr service
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| * Trying Galaxy
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| ** In and out from AmiGO
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| ** Sessions via local Galaxy install
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| * Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes)
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| * Organizing annotation results by qualifier
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| * Expand the scope of community annotation (depending on user feedback).
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| * RSS update on terms and gps (could be tied to GONUTs for timeliness?)
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| [[Category:Software]] | | [[Category:Software]] |
| [[Category:AmiGO]] | | [[Category:AmiGO]] |
| [[Category:Software Progress]] | | [[Category:Software Progress]] |