AmiGO 1 8
Status
Currently in production.
New features
- Centralized internal testing (kappa)
- GOOSE integrated into framework (GOOSE)
- Rapid searching (live search)
- New term details with improved graph view (term details for GO:0022008)
- Speed--new caching sub-system for several components (see above for example)
New experimental (beta) features
- [New] Static version of the Lucene search for fallback (term gene product).
- Matrix tool (nmatrix)
- Integrate new RG views from Sven (may be deferred) (phylotree)
- Check licensing of JS tree viewer (ntree)
- Relation filtering (may be bumped to deferred)
- Start with term enrichment and work out
Known issues
- Slimmer bug [1]
Deferred (alpha) features
Switch TE caching over from page render caching to data caching (currently evaluating sqlite3)[likely bumped in favor of new tools]- Term request client for SF (AKA ART) (XP term request)
- Could this be better done in wiki?
- Coannotation (possible coannotation interface)
- Advanced graph visualizations [2] [3]
- Early plugin framework done
- Heatmap and random plugin examples
- Workspaces, generalization of sessions (concept)
- Addition of ubiquitous completion in boxes
- Front page with completion (concept)
- xprods in 1.5
- xprods in 1.6
- Examples (all using experimental bp_xp_mouse_anatomy xps):
- heart
- heart development
- TAZ orthoset (notice heart in top right corner)
- Examples (all using experimental bp_xp_mouse_anatomy xps):
Plans and TBD
- Migrate peripheral pages to new framework (ongoing)
- Migrate core pages over to the new framework (ongoing)
- Relations for TE
- Slimmer rebuild
- Lucene
- Replace traditional search with lucene-backed
- Everything to consume Solr service
- Trying Galaxy
- In and out from AmiGO
- Sessions via local Galaxy install
- Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes)
- Organizing annotation results by qualifier
- Expand the scope of community annotation (depending on user feedback).
- RSS update on terms and gps (could be tied to GONUTs for timeliness?)