AmiGO 1 9: Difference between revisions
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== Backend == | == Backend == | ||
* Newick redo :looking: | |||
* Newick redo | |||
== Bugs == | == Bugs == | ||
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* GP/Term Matrix. | * GP/Term Matrix. | ||
* Column 16 | * Column 16 | ||
* Solr | * Convert most searches to Solr backend. | ||
** Replace traditional search with lucene-backed | ** Replace traditional search with lucene-backed | ||
** Everything to consume Solr service | ** Everything (except relational case) to consume Solr service | ||
* Slimmer rebuild | * Slimmer rebuild | ||
* Trying Galaxy | * Trying Galaxy | ||
** Galaxy hooks. | |||
** In and out from AmiGO | ** In and out from AmiGO | ||
** Sessions via local Galaxy install | ** Sessions via local Galaxy install |
Revision as of 20:15, 1 October 2010
Status
On paper.
Will soon be at experimental.
- Testing:
- TBD
New features
- TBD
Current work
Frontend
- Search :started:
- Ubiquitous completion
- Interface to search index.
- Bump current search to different page.
- TBD
Backend
- Newick redo :looking:
Bugs
- Slimmer bug [1]
Experimental (beta) features
- Integrate new RG views from Sven (may be deferred) (phylotree)
- Check licensing of JS tree viewer (ntree)
- Relation filtering (may be bumped to deferred)
- Start with term enrichment and work out
Deferred (alpha) features
Switch TE caching over from page render caching to data caching (currently evaluating sqlite3)[likely bumped in favor of new tools]- Term request client for SF (AKA ART) (XP term request)
- Could this be better done in wiki?
- Coannotation (possible coannotation interface)
- Advanced graph visualizations [2] [3]
- Early plugin framework done
- Heatmap and random plugin examples
- Workspaces, generalization of sessions (concept)
- Addition of ubiquitous completion in boxes
- Front page with completion (concept)
- xprods in 1.5
- xprods in 1.6
- Examples (all using experimental bp_xp_mouse_anatomy xps):
- heart
- heart development
- TAZ orthoset (notice heart in top right corner)
- Examples (all using experimental bp_xp_mouse_anatomy xps):
Plans and TBD
This area is for things that are still in the planning stage or otherwise have no functioning public code.
- Migrate peripheral pages to new framework (ongoing)
- Migrate core pages over to the new framework (ongoing)
- Term Enrichment
- Species
- Relation filtering (regulates)
- GP/Term Matrix.
- Column 16
- Convert most searches to Solr backend.
- Replace traditional search with lucene-backed
- Everything (except relational case) to consume Solr service
- Slimmer rebuild
- Trying Galaxy
- Galaxy hooks.
- In and out from AmiGO
- Sessions via local Galaxy install
- Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes)
- Organizing annotation results by qualifier
- Expand the scope of community annotation (depending on user feedback).
- RSS update on terms and gps (could be tied to GONUTs for timeliness?)