AmiGO 1 9
Status
On paper.
Will soon be at experimental.
- Testing:
- TBD
New features
- TBD
Current work
Frontend
- Search
- Ubiquitous completion
- Interface to search index.
- Bump current search to different page.
- TBD
Backend
- Convert most searches to Solr backend.
- Galaxy hooks.
Bugs
- Slimmer bug [1]
Experimental (beta) features
- Integrate new RG views from Sven (may be deferred) (phylotree)
- Check licensing of JS tree viewer (ntree)
- Relation filtering (may be bumped to deferred)
- Start with term enrichment and work out
Deferred (alpha) features
Switch TE caching over from page render caching to data caching (currently evaluating sqlite3)[likely bumped in favor of new tools]- Term request client for SF (AKA ART) (XP term request)
- Could this be better done in wiki?
- Coannotation (possible coannotation interface)
- Advanced graph visualizations [2] [3]
- Early plugin framework done
- Heatmap and random plugin examples
- Workspaces, generalization of sessions (concept)
- Addition of ubiquitous completion in boxes
- Front page with completion (concept)
- xprods in 1.5
- xprods in 1.6
- Examples (all using experimental bp_xp_mouse_anatomy xps):
- heart
- heart development
- TAZ orthoset (notice heart in top right corner)
- Examples (all using experimental bp_xp_mouse_anatomy xps):
Plans and TBD
- Migrate peripheral pages to new framework (ongoing)
- Migrate core pages over to the new framework (ongoing)
- Relations for TE
- Slimmer rebuild
- Solr
- Replace traditional search with lucene-backed
- Everything to consume Solr service
- Trying Galaxy
- In and out from AmiGO
- Sessions via local Galaxy install
- Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes)
- Organizing annotation results by qualifier
- Expand the scope of community annotation (depending on user feedback).
- RSS update on terms and gps (could be tied to GONUTs for timeliness?)