AmiGO 1 9

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Revision as of 20:11, 1 October 2010 by Sjcarbon (talk | contribs)
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Status

On paper.

Will soon be at experimental.

  • Testing:
    • TBD

New features

  • TBD

Current work

Frontend

  • Search
    • Ubiquitous completion
    • Interface to search index.
    • Bump current search to different page.
  • GP/Term Matrix.
  • TBD

Backend

  • Convert most searches to Solr backend.
  • Galaxy hooks.
  • Newick redo.

Bugs

  • Slimmer bug [1]

Experimental (beta) features

  • Integrate new RG views from Sven (may be deferred) (phylotree)
    • Check licensing of JS tree viewer (ntree)
  • Relation filtering (may be bumped to deferred)
    • Start with term enrichment and work out

Deferred (alpha) features

  • Switch TE caching over from page render caching to data caching (currently evaluating sqlite3) [likely bumped in favor of new tools]
  • Term request client for SF (AKA ART) (XP term request)
    • Could this be better done in wiki?
  • Coannotation (possible coannotation interface)
  • Advanced graph visualizations [2] [3]
    • Early plugin framework done
    • Heatmap and random plugin examples
  • Workspaces, generalization of sessions (concept)
  • Addition of ubiquitous completion in boxes

Plans and TBD

  • Migrate peripheral pages to new framework (ongoing)
  • Migrate core pages over to the new framework (ongoing)
  • Term Enrichment
    • Species
    • Relation filtering (regulates)
  • Column 16
  • Solr backed AmiGO (see above)
    • Replace traditional search with lucene-backed
    • Everything to consume Solr service
  • Slimmer rebuild
  • Trying Galaxy
    • In and out from AmiGO
    • Sessions via local Galaxy install
  • Cross-product and inter-ontology link support (may be punted until following release, but we will start on necessary infrastructure changes)
  • Organizing annotation results by qualifier
  • Expand the scope of community annotation (depending on user feedback).
  • RSS update on terms and gps (could be tied to GONUTs for timeliness?)