Difference between revisions of "AmiGO 2 Manual: Linking"

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The supported format for linking to a GO term is:
 
The supported format for linking to a GO term is:
  
http://amigo.geneontology.org/term/GO:XXXXXXX
+
<pre>http://amigo.geneontology.org/term/GO:XXXXXXX</pre>
  
 
For example:
 
For example:
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  http://amigo.geneontology.org/term/GO:0022008
 
  http://amigo.geneontology.org/term/GO:0022008
  
This will resolve to an HTML page. Users may also manipulate the default search of the embedded search pane on a term details page by using the parameters described in the [[AmiGO_2_Manual:_Linking#Searches]] section below.  
+
This will resolve to an HTML page. Users may also manipulate the default search of the embedded search pane on a term details page by using the parameters described in the [[AmiGO_2_Manual:_Linking#Searches | Searches]] section below.  
  
 
= Gene Products =
 
= Gene Products =
 +
 +
 +
The supported format for linking to a GO gene product is:
 +
 +
<pre>http://amigo.geneontology.org/gene_product/AAA:ZZZZZZZ</pre>
 +
 +
For example:
 +
 +
http://amigo.geneontology.org/gene_product/MGI:MGI:2177178
 +
 +
This will resolve to an HTML page. Users may also manipulate the default search of the embedded search pane on a gene product details page by using the parameters described in the [[AmiGO_2_Manual:_Linking#Searches | Searches]] section below.
  
 
= Searches =  
 
= Searches =  
  
= REST and other services =
+
== Base search pages ==
 +
 
 +
== Defining incoming searches ==
  
Users may also be interested in some of the more RESTy aspects AmiGO 2, listed here:
+
= Other pages =
[[AmiGO_2_Manual:_Services]].
 
  
= Widgets =
+
      /amigo2/amigo/visualize
 +
      /amigo2/amigo/search/ontology
  
Users may also be interested in the possibility of incorporating the widgets and interfaces used in AmiGO 2 into their own applications: [[AmiGO_2_Manual:_Widgets]].
 
  
 
[[Category:AmiGO_2_Manual]]
 
[[Category:AmiGO_2_Manual]]

Revision as of 15:52, 16 October 2013

AmiGO 2 now offers a stable set of URLs for linking. This page contains the supported methods for linking into AmiGO 2.

Users may also be interested in some of the more RESTy aspects of AmiGO 2 or the possibility of incorporating the widgets and interfaces used in AmiGO 2 into their own applications.

Terms

The supported format for linking to a GO term is:

http://amigo.geneontology.org/term/GO:XXXXXXX

For example:

http://amigo.geneontology.org/term/GO:0022008

This will resolve to an HTML page. Users may also manipulate the default search of the embedded search pane on a term details page by using the parameters described in the Searches section below.

Gene Products

The supported format for linking to a GO gene product is:

http://amigo.geneontology.org/gene_product/AAA:ZZZZZZZ

For example:

http://amigo.geneontology.org/gene_product/MGI:MGI:2177178

This will resolve to an HTML page. Users may also manipulate the default search of the embedded search pane on a gene product details page by using the parameters described in the Searches section below.

Searches

Base search pages

Defining incoming searches

Other pages

     /amigo2/amigo/visualize
     /amigo2/amigo/search/ontology