AmiGO 2 Manual: Linking

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Warning: This is a proposal and should not be treated like documentation.

AmiGO 2 now offers a stable set of URLs for linking. This page contains the supported methods for linking into AmiGO 2.

Users may also be interested in some of the more RESTy aspects of AmiGO 2 or the possibility of incorporating the widgets and interfaces used in AmiGO 2 into their own applications.

Terms

The supported format for linking to a GO term is:

http://amigo.geneontology.org/term/GO:XXXXXXX

For example:

http://amigo.geneontology.org/term/GO:0022008

This will resolve to an HTML page. Users may also manipulate the default search of the embedded search pane on a term details page by using the parameters described in the Searches section below.

Gene Products

The supported format for linking to a GO gene product is:

http://amigo.geneontology.org/gene_product/AAA:ZZZZZZZ

For example:

http://amigo.geneontology.org/gene_product/MGI:MGI:2177178

This will resolve to an HTML page. Users may also manipulate the default search of the embedded search pane on a gene product details page by using the parameters described in the Searches section below.

Searches

Base search pages

Defining incoming searches

Other pages

     /amigo2/amigo/visualize
     /amigo2/amigo/search/ontology